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Publications

Liedtke, T.L., M.S. Zimmerman, R.G. Tomka, C. Holt, and L. Jennings. 2916. Behavior and movements of adult spring Chinook salmon (Oncorhynchus tshawytscha) in the Chehalis River Basin, southwestern Washington, 2015. U.S. Geological Survey Open-File Report 2016-1158, 57 p., https://dx.doi.org/10.3133/ofr20161158
Connor, W.P., and F.L. Mullins, K.F. Tiffan, J.M. Plumb, R.W. Perry, J.M. Erhardt, R.J. Hemingway, B.K. Bickford, and T.N. Rhodes. 2017. Research, monitoring, and evaluation of emerging issues and measures to recover the Snake River Fall Chinook Salmon ESU, January, 2016-December, 2016. Bonneville Power Administration. Project Number 199102900. Contract Numbers 72899, and 72898. 67 p.
Counihan, T.D., and S.M. Bollens. 2017. Early detection monitoring for larval dreissenid mussels: how much plankton sampling is enough?. Environmental Monitoring and Assessment, 189: 98., https://dx.doi.org/10.1007/s10661-016-5737-x
Erhardt, J.M., B.K. Bickford, R.J. Hemingway, T.N. Rhodes, and K.F. Tiffan. 2017. Snake River fall Chinook salmon life history investigations, 1/1/2016 - 12/31/2016. Bonneville Power Administration. Project Number 2002-032-00, Contract Number 72252. 21 p.
Hansen, A.C., T.J. Kock, and G.S. Hansen. 2017. Synthesis of downstream fish passage information at projects owned by the U.S. Army Corps of Engineers in the Willamette River Basin, Oregon. U.S. Geological Survey Open-File Report 2017-1101., https://dx.doi.org/10.3133/ofr20171101
Haskell, C.A., D.A. Beauchamp, and S.M. Bollens. 2017. Trophic interactions and consumption rates of subyearling Chinook salmon and nonnative juvenile American Shad in Columbia River reservoirs. Transactions of the American Fisheries Society, 146(2): 291-298., https://dx.doi.org/10.1080/00028487.2016.1264997
Hassett, W., S.M. Bollens, T.D. Counihan, G. Rollwagen-Bollens, J. Zimmerman, S. Katz, and J. Emerson. 2017. Veligers of the invasive Asian clam Corbicula fluminea in the Columbia River Basin: broadscale distribution, abundance, and ecological associations. Lake Reservoir Management., https://dx.doi.org/10.1080/10402381.2017.1294218
Johnson, M.J., J.R. Hatten, J.A. Holmes, and P.B Shafroth. 2017. Identifying western yellow-billed cuckoo breeding habitat with a dual modelling approach. Ecological Modelling, 347: 50-62., https://dx.doi.org/10.1016/j.ecolmodel.2016.12.010
Tiffan, K., and W.R. Hurst. 2017. Feeding ecology of non-native Siberian prawns, Palaemon modestus (Heller, 1862) (Decapoda, Palaemonidae), in the lower Snake River, Washington, U.S.A.. Crustaceana, 89(6-7): 721-736., https://dx.doi.org/10.1163/15685403-00003553
Tiffan, K.F., J.M. Erhardt, and B.K. Bickford. 2017. Ecology of the opossum shrimp (Neomysis mercedis) in a lower Snake River reservoir, Washington. Northwest Science, 91(2): 124-139., https://dx.doi.org/10.3955/046.091.0205
Ward, David L., A.F. Casper, T.D. Counihan, J. M. Bayer, I.R. Waite, J.J. Kosovich, C.G. Chapman, E.R. Irwin, J.S. Sauer, B.S. Ickes, and A. J. McKerrow. 2017. Long-term fish monitoring in large river: Utility of "benchmarking" across basins. Fisheries 42(2): 100-114., https://dx.doi.org/10.1080/03632415.2017.1276330
Allen, M.B. , R.O. Engle, J.S. Zendt, F.C. Shrier, J.T. Wilson, and P.J. Connolly. 2016. Salmon and steelhead in the White Salmon River after the removal of Condit Dam - planning efforts and recolonization results. Fisheries 41(4): 190-203, https://dx.doi.org/10.1080/03632415.2016.1150839
Banish, N.P., S.M. Burdick, and K.R. Moyer. 2016. Efficiency of portable antennas for detecting passive integraded transponder tags in stream-dwelling salmonids. PLoS ONE 11(2): e0149898
Beeman, J.W., S.D. Evans, P.V. Haner, H.C. Hansel, A.C. Hansen, G.S. Hansen, T.W. Hatton, E.E., Kofoot, and J.M. Sprando. 2016. Evaluation of the biological and hydraulic performance of the portable floating fish collector at Cougar Reservoir and Dam, Oregon, September 2015-January 2016. U.S. Geological Survey Open-File Report 2-06-1197, 98 p., https://dx.doi.org/10.3133/ofr20161197
Beeman, J.W., S.D. Evans, P.V. Haner, H.C. Hansel, A.C. Hansen, G.S. Hansen, T.W. Hatton, J.M. Sprando, C.D. Smith, and N.S. Adams. 2016. Evaluation of the hydraulic and biological performance of the portable floating fish collector at Cougar Reservoir and Dam, Oregon, 2014. U.S. Geological Survey Open-File Report 2016-1003, https://dx.doi.org/10.3133/ofr20161003
Courter, I., T. Garrison, T. Kock, and R. Perry. 2016. Evaluation of stream flow effects on smolt survival in the Yakima River Basin, Washington, 2012-2014. Technical Report for Yakima Basin Joint Board, U.S. Bureau of Reclamation, System Operations Advisory Committee. 67 p.
Courter, I.I., T.M. Garrison, T.J. Kock, R.W. Perry, D.B. Child, and J.D. Hubble. 2016. Benefits of prescribed flows for salmon smolt survival enhancement vary longitudinally in a highly managed river system. River Research and Applications, (Early View)., https://dx.doi.org/10.1002/rra.3066
Cupp, A.R., R.A. Erickson, K.T. Fredricks, N.M. Swyers, T.W. Hatton, and J.J. Amberg. 2016. Responses of invasive silver and bighead carp to a carbon dioxide barrier in outdoors ponds. Canadian Journal of Fisheires and Aquatic Sciences, (Pre-Press), https://dx.doi.org/10.1139/cjfas-2015-0472
Donaldson, M.R., J.J. Amberg, S. Adhikari, A.R. Cupp, N.R. Jensen, J.G. Romine, A. Wright, M.P. Gaikowski, and C.D. Suski. 2016. Carbon Dioxide as a tool to deter the movement of invasive Bigheaded Carps. Transactions of the American Fisheries Society, 145(3): 657-670. ISSN: 0002-8487 (Print) 1548-8659 (Online)., https://dx.doi.org/10.1080/00028487.2016.1143397
Erhardt, J.M., and K.F. Tiffan. 2016. Ecology of nonnative Siberian prawn (Palaemon modestus) in the lower Snake River, Washington, USA. Aquatic Ecology, 50(4): 607-621., https://dx.doi.org/10.1007/s10452-016-9581-4
Erhardt, J.M.,and D.L. Scarnecchia. 2016. Growth model selection and its application for characterizing life history of a migratory Bull Trout (Salvelinus confluentus) population. Northwest Science, 90(3): 328-339, https://dx.doi.org/10.3955/046.090.0311
Giermakowski, J.T., J.R. Hatten, M.J. Johnson, J.A. Holmes, E.M. Nowak, M. Peters. 2016. Final Report: Predicting effects of climate change on riparian obligate species in the Southwestern United States. Bureau of Reclamation, Desert Landscape Conservation Cooperative,Albuquerque, New Mexico: University of New Mexico. Agreement Number: R11AC81532.
Grubbs, R.D., J.K. Carlson, J.G. Romine, T.H. Curtis, W.D. McElroy, C.T. McCandless, C.F. Cotton, and J.A. Musick. 2016. Critical assessment and remifications of a purported marine trophic cascade. Scientific Reports 6, Article number: 20970, https://dx.doi.org/10.1038/srep20970
Hamilton, J.B., D.W. Rondorf, W.R. Tinniswood, R.J. Leary, T. Mayer, C. Gavette, and L.A. Casal. 2016. The persistence and characteristics of Chinook salmon migrations to the Upper Klamath River prior to exclusion by dams. Oregon Historical Quarterly, 117(3): 326-77.
Hatten, J.R.. 2016. A satellite model of Southwestern Willow Flycatcher (Empidonax traillii extimus) breeding habitat and a simulation of potential effects of tamarisk leaf beetles (Diorhabda spp.), Southwestern United States. U.S. Geological Survey Open-File Report 2016-1120, 88 p., https://dx.doi.org/10.3133/ofr20161120
Hatten, J.R., J.T. Giermakowski, J.A. Holmes, E.M. Nowak, M.J. Johnson, K.E. Ironside, C. van Ripper III, M. Peters, C. Truettner, and K.L, Cole. 2016. Identifying bird and reptile vulnerabilities to climate change in the Southwestern United States. U.S. Geological Survey Open-File Report 2016-1085, 76 p., https://dx.doi.org/10.3133/ofr20161085
Hildebrand, L.R., A. Drauch Schreier, K. Lepla, S.O. McAdam, J. McLellan, M.J. Parsley, V.L.Paragamian, and S.P. Young. 2016. Status of white sturgeon (Acipenser transmontanus Richardson, 1863) throughout the species range, threats to survival, and prognosis for the future. Journal of Applied Ichthyology, 32(S1): 261-312, https://dx.doi.org/10.1111/jai.13243
Jacobson, R.B., M.J. Parsley, M.L. Annis, M.E. Colvin, T.L. Welker, and D.A. James. 2016. Development of working hypotheses linking management of the Missouri River to population dynamics of Scaphirhynchus albus (pallid sturgeon). U.S. Geological Survey Open-File Report 2015-1236, 33 p., https://dx.doi.org/10.3133/ofr20151236
Jager, H.I., M.J. Parsley, J.J. Cech Jr., R.L. McLaughlin, P.S. Forsythe, R.F. Elliott, and B.M. Pracheil. 2016. Reconnecting fragmented sturgeon populations in North American rivers. Fisheries 41(3): 140-148, https://dx.doi.org/10.1080/03632415.2015.1132705
Jones, E.C., R.W. Perry, J.C. Risley, N.A. Som, and N.J. Hetrick. 2016. Construction, calibration, and validation of the RBM10 water temperature model for the Trinity River, northern California. U.S. Geological Survey Open-File Report 2016-1056, 46 p., https://dx.doi.org/10.3133/ofr20161056
Kock, T.J., B.K. Ekstrom, T.L. Liedtke, J.D. Serl, and M. Kohn. 2016. Behavior patterns and fates of adult steelhead, Chinook salmon, and coho salmon released into the upper Cowlitz River Basin, Washington, 2005-09 and 2012. U.S. Geological Survey Open-File Report 2016-1144, 36 p., https://dx.doi.org/10.3133/ofr20161144
Kock, T.J., Perry, R.W., Monzyk, F.R., Pope, A.C., and Plumb, J.M.. 2016. Development of a study design and implementation plan to estimate juvenile salmon survival in Lookout Point Reservoir and other reservoirs of the Willamette Project, western Oregon. U.S. Geological Survey Open-File Report 2016-1211, 25 p., https://dx.doi.org/10.3133/ofr20161211
Kock, T.J., R.W. Perry, C. Gleizes, W. Dammers, and T.L. Liedtke. 2016. Angler harvest, hatchery return, and tributary stray rates of recycled adult summer steelhead Oncorhynchus mykiss in the Cowlitz River, Washington. River Research Applications, 32(8): 1790-1799., https://dx.doi.org/10.1002/rra.3023
Kock, T.J., R.W. Perry, and A.C. Hansen. 2016. Survival of juvenile Chinook salmon and coho salmon in the Roza Dam fish bypass and in downstream reaches of the Yakima River, Washington, 2016. U.S. Geological Survey Open-File Report 2016-1210, 32 p., https://dx.doi.org/10.3133/ofr20161210
Mesa, M.G., L.K. Weiland, H.E. Christiansen, and C.A. Peery. 2016. Synthesis of juvenile lamprey migration and passage research and monitoring at Columbia and Snake River Dams. U.S. Army Corps of Engineers, Portland and Walla Walla Districts. Study Codes: LMP0P-12-2, LMP-W-13-2. 61 p.
Perry, R.W., J.E. Kirsch, and A.N. Hendrix. 2016. Estimating juvenile Chinook salmon (Oncorhynchus tshawytscha) abundance from beach seine data collected in the Sacramento-San Joaquin Delta and San Francisco Bay, California. U.S. Geological Survey Open-File Report 2016-1099, 21 p., https://dx.doi.org/10.3133/ofr20161099
Perry, R.W., R.A. Buchanan, P.L. Brandes, J.R. Barau, and J.A. Israel. 2016. Anadromous salmonids in the Delta: New science 2006-2016. Special Issue: The State of Bay-Delta Science 2016, Part 1 in San Francisco Estuary and Watershed Science, 14(2), Article 7.
Perry, R.W., T.J. Kock,, I.I.Courter, T.M Garrison, J.D., Hubble, and D.B. Child. 2016. Dam operations affect route-specific passage and survival of juvenile Chinook salmon at a main-stem diversion dam. River Research and Applications, (Early View), https://dx.doi.org/10.1002/rra.3059
Pope, A.C., J.R. Skalski, T. Lockhart, and R.A. Buchanan. 2016. Generation of multistate release-recapture models using a graphic user interface (GUI). Animal Biotelemetry, 4: 23., https://dx.doi.org/10.1186/s40317-016-0115-6
Romine, J.G., R.W. Perry, A.C. Pope, P. Stumpner, T.L. Liedtke, K.K. Kumagai, and R.L. Reeves. 2016. Evaluation of a floating fish guidance structure at a hydrodynamically complex river junction in the Sacramento-San Joaquin River Delta, California, USA. Marine and Freshwater Research, (Online Early)., https://dx.doi.org/10.1071/MF15285
Tiffan, K.F., J.R. Hatten, and D.A. Trachtenbarg. 2016. Assessing juvenile salmon rearing habitat and associated predation risk in a lower Snake River reservoir. River Research and Applications, 32(5): 1030-1038, https://dx.doi.org/10.1002/rra.2934
Adams, N.S., C.D. Smith, J.M. Plumb, G.S. Hansen, and J.W. Beeman. 2015. An evaluation of fish behavior upstream of the water temperature control tower at Cougar Dam, Oregon, using acoustic cameras, 2013. U.S. Geological Survey Open-File Report 2015-1124, 62 p., https://dx.doi.org/10.3133/ofr20151124
Beeman, J.W. and N.S. Adams. 2015. In-reservoir behavior, dam passage, and downstream migration of juvenile Chinook salmon and juvenile steelhead from Detroit Reservoir and dam to Portland, Oregon, February 2013-February 2014. U.S. Geological Survey Open-File Report 2015-1090, 92 p., https://dx.doi.org/10.3133/ofr20151090
Beeman, J.W., A.C. Hansen, and J.M. Sprando. 2015. Observational data on the effects of infection by the copepod Salmincola californiensis on the short- and long-term viability of juvenile Chinook salmon (Oncorhynchus tshawytscha) implanted with telemetry tags. Animal Biotelemetry, 3:20, https://dx.doi.org/10.1186/s40317-015-0056-5
Bellmore, J.R., C.V. Baxter, and P. Connolly. 2015. Spatial complexity reduces interaction strengths in the meta-food web of a river floodplain mosaic. Ecology, 96(1): 274-283, https://dx.doi.org/10.1890/14-0733.1
Connor, W.P., and F.L. Mullins, Tiffan, K.F., J.M. Plumb, R.W. Perry, J.M. Erhardt, S.J. St. John, B.K. Bickford, and T.N. Rhoades. 2015. Research, monitoring, and evaluation of emerging issues and measures to recover the Snake River fall Chinook salmon ESU. January, 2014 - December, 2014. BPA Proj. Number 199102900. BPA Contract Number 272492. Bonneville Power Administration Report. 80 p.
Emerson, J.E., S.M. Bollens, and T.D. Counihan. 2015. Seasonal dynamics of zooplankton in Columbia-Snake River reservoirs, with special emphasis on the invasive copepod Pseudodiaptomus forbesi. Aquatic Invasions, 10(1): 25-40, https://dx.doi.org/10.3391/ai.2015.10.1.03
Hardiman, J., G. Holmberg, and N. Elder. 2015. Boat ramp locations within the Columbia River Basin with associated recreational use, water quality measurements, and risk assessment data for zebra and quagga mussels - service definition file. U.S. Geological Survey ScienceBase, https://dx.doi.org/10.5066/F71N7Z6D
Hardiman, J.M., and M.B. Allen. 2015. Salmon habitat assessment for conservation planning in the lower White Salmon River, Washington. U.S. Geological Survey Open-File Report 2015-1100, 24 p., https://dx.doi.org/10.3133/20151100
Hatten, J.R., T.R. Batt, J.J. Skalicky, R. Engle, G. J. Barton, R.L. Fosness, and J. Warren. 2015. Effects of dam removal on tule fall Chinook salmon spawning habitat in the White Salmon River, Washington. River Research Applications, 32(7): 1481-1492., https://dx.doi.org/10.1002/rra.2982
Holbrook, C.M., R. Bergstedt, N.S. Adams, T.W. Hatton, and R.L. McLaughlin. 2015. Fine-scale pathways used by adult sea lampreys during riverine spawning migrations. Transactions of the American Fisheries Society, 144(3): 549-562, https://dx.doi.org/10.1080/00028487.2015.1017657
Jacobson, R.B., M.J. Parsley, M.L. Annis, M.E. Colvin, T.L. Welker, and D.A. James. 2015. Science information to support Missouri River Scaphirhynchus albus (pallid sturgeon) effects analysis. U.S. Geological Survey Open-File Report 2015-1226, 78 p., https://dx.doi.org/10.3133/ofr20151226
Jezorek, I.G., and P.J. Connolly. 2015. Biotic and abiotic influences on abundance and distribution of nonnative Chinook salmon and native ESA-listed steelhead in the Wind River, Washington. Northwest Science, 89(1): 58-74, https://dx.doi.org/10.3955/046.089.0105
Jezorek, I.G., and P.J. Connolly. 2015. Wind River Subbasin Restoration. Annual Report of U.S. Geological Survey activities January 2014 through December 2014. Bonneville Power Administration Report number 1998-019-00. 58 p.
Keep, S.G., M.B. Allen, and J.S. Zendt. 2015. Comparison of electronarcosis and carbon dioxide sedation effects on travel time in adult Chinook and coho salmon. North American Journal of Fisheries Management, 35(5): 906-912, https://dx.doi.org/10.1080/02755947.2015.1069427
Kock, T.J., J.W. Beeman, A.C. Hansen, H.C. Hansel, G.S. Hansen, T.W. Hatton, E.E. Kofoot, M.D. Sholtis, and J.M. Sprando. 2015. Behavior, passage, and downstream migration of juvenile Chinook salmon from Detroit Reservoir to Portland, Oregon, 2014-15. U.S. Geological Survey Open-File Report 2015-1220, 30 p., https://dx.doi.org/10.3133/ofr20151220
Kock, T.J., T.L. Liedtke, B.K. Ekstrom, and W.R. Hurst. 2015. Evaluation of two juvenile salmon collection devices at Cowlitz Falls Dam, Washington, 2014. U.S. Geological Survey Open-File Report 2015-1054, 30 p., https://dx.doi.org/10.3133/ofr20151054
Liedtke, T.L., L.K. Weiland, and M.G. Mesa. 2015. Vulnerability of larval lamprey to Columbia River hydropower system operations - effects of dewatering on larval lamprey movements and survival. U.S. Geological Survey Open-File Report 2015-1157, https://dx.doi.org/10.3133/ofr20151157
Mesa, M.G., and B.P. Rose. 2015. An assessment of morphometric indices, blood chemistry variables and an energy meter as indicators of the whole body lipid content in Micropterus dolomieu, Sander vitreus and Ictalurus punctatus. Journal of Fish Biology, 86(2): 755-764, https://dx.doi.org/10.1111/jfb.12600
Perry, R.W., J.M. Plumb, and C.W. Huntington. 2015. Using a laboratory-based growth model to estimate mass- and temperature-dependent growth parameters across populations of juvenile Chinook salmon. Transactions of the American Fisheries Society, 144(2): 331-336, https://dx.doi.org/10.1080/00028487.2014.996667
Perry, R.W., N.S. Adams, J.G. Romine, and T.L. Liedtke. 2015. Sections 3.3, 3.6, and 3.8 in 2012 Georgiana Slough Non-Physical Barrier Performance Evaluation Project Report. California Department of Water Resources, December 2015. 298 p.
Perry, R.W., P.L. Brandes, J.R. Burau, P.T. Sandstrom, and J.R. Skalski. 2015. Effects of tides, river flow, and gate operations on entrainment of juvenile salmon into the interior Sacramento-San Joaquin River Delta. Transactions of the American Fisheries Society, 144(3): 445-455, https://dx.doi.org/10.1080/00028487.2014.1001038
Plumb, J.M., N.S. Adams, R.W. Perry, C.M. Holbrook, J.G. Romine, A.R. Blake, and J.R. Burau. 2015. Diel activity patterns of juvenile late fall-run Chinook salmon with implications for operation of a gated water diversion in the Sacramento-San Joaquin River Delta. River Research Applications, 32(4): 711-720, https://dx.doi.org/10.1002/rra.2885
Plumb, J.M., and C.M. Moffitt. 2015. Re-estimating temperature-dependent consumption parameters in bioenergetics models for juvenile Chinook salmon. Transactions of the American Fisheries Society, 144(2): 323-330, https://dx.doi.org/10.1080/00028487.2014.986336
Romine, J.G., N.R. Jensen, M.J. Parsley, R.F. Gaugush, T.J. Severson, T.W. Hatton, R.F. Adams, and M.P. Gaikowski. 2015. Response of bighead carp and silver carp to repeated water gun operation in an enclosed shallow pond. North American Journal of Fisheries Management, 35(3): 440-453, https://dx.doi.org/10.1080/02755947.2015.1012279
Som, N.A., D.H. Goodman, R.W. Perry, and T.B. Hardy. 2015. Habitat suitability criteria via parametric distributions: estimation, model selection and uncertainty. River Research Applications, (Early View), https://dx.doi.org/10.1002/rra.2900
Sytsma, M.D., S. Phillips, and T.D. Counihan. 2015. Dreissenid mussel research priorities workshop. Center for Lakes and Reservoirs Publications and Presentations. Paper 49
Tiffan, K.F. and W.P. Connor. 2015. Snake River Fall Chinook Salmon life history investigations, 1/1/2013 - 12/31/2013. Bonneville Power Administration Report. BPA Project # 2002-032-00.
Tiffan, K.F., R.W. Perry, W.P. Connor, F.L. Mullins, C.D. Rabe, and D.D. Nelson. 2015. Survival, growth, and tag retention in age-0 Chinook salmon implanted with 8-, 9-, and 12-mm PIT tags. North American Journal of Fisheries Management, 35(4): 845-852, https://dx.doi.org/10.1080/02755947.2015.1052163
Adams, N.S., J.M. Plumb, R.W. Perry, and D.W. Rondorf. 2014. Performance of a surface bypass structure to enhance juvenile steelhead passage and survival at lower Granite Dam, Washington. North American Journal of Fisheries Management, 34(3): 576-594, https://dx.doi.org/10.1080/02755947.2014.901256
Beeman, J.W., H.C. Hansel, A.C. Hansen, S.D. Evans, P.V. Haner, T.W. Hatton, E.E. Kofoot, J.M. Sprando, and C.D. Smith. 2014. Behavior and dam passage of juvenile Chinook salmon and juvenile steelhead at Detroit Reservoir and Dam, Oregon, March 2012-February 2013. U.S. Geological Survey Open-File Report 2014-1144, 62 p., https://dx.doi.org/10.3133/ofr20141144
Beeman, J.W., H.C. Hansel, A.C. Hansen, S.D. Evans, P.V. Haner, T.W. Hatton, E.E. Kofoot, J.M. Sprando, and C.D. Smith. 2014. Behavior and dam passage of juvenile Chinook salmon at Cougar Reservoir and Dam, Oregon, March 2012-February 2013. U.S. Geological Survey Open-File Report 2014-1177, 52 p., https://dx.doi.org/10.3133/ofr20141177
Beeman, J.W., S.D. Evans, P.V. Haner, H.C. Hansel, A.C. Hansen, C.D. Smith, and J.M. Sprando. 2014. Passage and survival probabilities of juvenile Chinook salmon at Cougar Dam, Oregon, 2012. U.S. Geological Survey Open-File Report 2014-1038, 64 p.
Bellmore, J., A.K. Fremier, F. Mejia, and M. Newsom. 2014. The response of stream periphyton to Pacific salmon: using a model to understand the role of environmental context. Freshwater Biology, 59(7): 1437-1451, https://dx.doi.org/10.1111/fwb.12356
Bellmore, J., and C.V. Baxter. 2014. Effects of geomorphic process domains on river ecosystems - a comparison of floodplain and confined valley segments. River Research and Applications, 30(5): 617-630, https://dx.doi.org/10.1002/rra.2672
Christiansen, H.E., A.C. Mehinto, F. Yu, R.W. Perry, N.D. Denslow, A.G. Maule, and M.G. Mesa. 2014. Correlation of gene expression and contaminant concentrations in wild largescale suckers: A field-based study. Science of the Total Environment, 484: 379-389, https://dx.doi.org/10.1016/j.scitotenv.2013.08.034
Connor, W.P., K.F. Tiffan, F. Mullins, B. Arnsberg, T.D. Cooney, P.A. Groves, D.J. Milks, S.J. Rosenberger, and W. Young. 2014. Research, monitoring, and evaluation of emerging issues and measures to recover the Snake River fall Chinook salmon ESU. 1/1/2012 - 12/31/2013 Annual Report. 1991-029-00, Bonneville Power Administration.
Counihan, T.D., I.R. Waite, E.B. Nilsen, J.M. Hardiman, E. Elias, G. Gelfenbaum, and S.D. Zaugg. 2014. A survey of benthic sediment contaminants in reaches of the Columbia River Estuary based on channel sedimentation characteristics. Science of The Total Environment 484(2014): 331-343, https://dx.doi.org/10.1016/j.scitotenv.2014.03.013
Counihan, T.D., J.M. Hardiman, and S.Waste. 2014. Status and Trends Monitoring of the mainstem Columbia River - Sample frame development and review of programs relevant to the development of an integrated approach to monitoring. PNAMP Report Series 2013-003.
Erhardt, J.M., and D.L. Scarnecchia. 2014. Population changes after 14 years of harvest closure on a migratory population of Bull Trout in Idaho. North American Journal of Fisheries Management, 34(3): 482-492., https://dx.doi.org/10.1080/02755947.2014.880767
Graves, D., and A. Maule. 2014. A stakeholder project to model water temperature under future climate scenarios in the Satus and Toppenish watersheds of the Yakima River Basin in Washington, USA. Climatic Change, 124(1-2): 399-411, https://dx.doi.org/10.1007/s10584-012-0643-x
Hardiman, J.M. and M.G. Mesa. 2014. The effects of increased stream temperatures on juvenile steelhead growth in the Yakima River Basin based on projected climate change scenarios. Climate Change, 124(1-2): 413-426.
Hatten, J.R.. 2014. Mapping and monitoring Mount Graham red squirrel habitat with Lidar and Landsat imagery. Ecological Modeling 289: 106-123, https://dx.doi.org/10.1016/j.ecolmodel.2014.07.004
Hatten, J.R., S.M. Waste, and A.G. Maule. 2014. Assessing climate-change risks to cultural and natural resources in the Yakima River Basin, Washington, USA. Climatic Change 124(1-2): 363-370, https://dx.doi.org/10.1007/s10584-014-1126-z
Hatten, J.R., T.R. Batt, P.J. Connolly, and A.G. Maule. 2014. Modeling effects of climate change on Yakima River salmonid habitats. Climatic Change, 124(1-2): 427-439, https://dx.doi.org/10.1007/s10584-013-0980-4
Jacobson, R.B., M.J. Parsley, M.L. Annis, M.E. Colvin, T.L. Welker, and D.A. James. 2014. Development of conceptual ecological models linking management of the Missouri River to pallid sturgeon population dynamics. U.S. Geological Survey Open-File Report 2015-1038, 47 p., https://dx.doi.org/10.3133/ofr20151038
Jenni, K., D. Graves, J. Hardiman, J. Hatten, M. Mastin, M. Mesa, J. Montag, T. Nieman, F. Voss, and A. Maule. 2014. Identifying stakeholder-relevant climate change impacts: A case study in the Yakima River Basin, Washington, USA. Climatic Change, 124(1): 371-384, https://dx.doi.org/10.1007/s10584-013-0806-4
Jezorek, I.G., and P.J. Connolly. 2014. Wind River subbasin restoration, November 1, 2012 through December 31, 2013 Annual Report. BPA Project No. 1998-019-00. 45 p.
Kock, T.J., T.L. Liedtke, B.K. Ekstrom, C. Gleizes, and W. Dammers. 2014. Evaluation of the behavior and movement of adult summer steelhead in the lower Cowlitz River, Washington, following collection and release, 2013-2014. U.S. Geological Sruvey Open-File Report 2014-1122, 20 p., https://dx.doi.org/10.3133/ofr20141122
Kock, T.J., T.L. Liedtke, B.K. Ekstrom, R.G. Tomka, and D.W. Rondorf. 2014. Evaluation of juvenile salmonid behavior near a prototype weir box at Cowlitz Falls Dam, Washington, 2013. U.S. Geological Survey Open-File Report 2014-1042, 24 p.
Liedtke, T.L., T.J. Kock, S.D. Evans, G.S. Hansen, and D.W. Rondorf. 2014. Post-release behavior and movement patterns of Chinook salmon (Oncorhynchus tshawytscha) and coho salmon (Oncorhynchus kisutch) after capture using alternative commercial fish gear, lower Columbia River, Washington and Oregon. U.S. Geological Survey Open-File Report 2014-1069, 36 p., https://dx.doi.org/10.3133/ofr20141069
Martens, K.D., T.M. Fish, G.A. Watson, and P.J. Connolly, P.J.. 2014. Methow River studies, Washington-abundance estimates from Beaver Creek and the Chewuch River screw trap, methodology testing in the Whitefish Island side channel, and survival and detection estimates from hatchery fish releases, 2013. U.S. Geological Survey Open-File Report 2014-1154, 38 p., https://dx.doi.org/10.3133/ofr20141154
Martens, K.D., W.T. Tibbits, G.A. Watson, M.A. Newsom, and P.J. Connolly. 2014. Methow and Columbia Rivers studies - Summary of data collection, comparison of database structure and habitat protocols, and impact of additional PIT tag interrogation systems to survival estimates, 2008 - 2012. U.S. Geological Survey Open-File Report 2014-1016, 92 p., https://dx.doi.org/10.3133/ofr20141016
Martens, K.D., and P.J. Connolly. 2014. Juvenile anadromous salmonid production in Upper Columbia River side channels with different levels of hydrological connection. Transactions of the American Fisheries Society, 143(3): 757-767, https://dx.doi.org/10.1080/00028487.2014.880740
Nilsen, E., S. Zaugg, D. Alverez, J. Morace, I. Waite, T. Counihan, J. Hardiman, L. Torres, R. Patino, M. Mesa, and R. Grove. 2014. Contaminants of legacy and emerging concern in largescale suckers (Catostomus macrocheilus) and the foodweb in the lower Columbia River, Oregon and Washington, USA. Science of the Total Environment, 484: 344-352, https://dx.doi.org/10.1016/j.scitotenv.2013.04.012
Orr, B.K., G.T. Leverich, Z.E. Diggory, T.L. Dudley, J.R. Hatten, K.R. Hultine, M.P. Johnson, and D. A. Orr. 2014. Riparian restoration framework for the Upper Gila River, Arizona. Technical Report June 2014, Stillwater Sciences, 145 p.
Ray, R.A., R.W. Perry, N.A. Som, and J.L. Bartholomew. 2014. Using cure models for analyzing the influence of pathogens on salmon survival. Transactions of the American Fisheries Society, 143(2): 387-398, https://dx.doi.org/10.1080/00028487.2013.862183
Romine, J.G., R.W. Perry, S.V. Johnston, C.W. Fitzer, S.W. Pagliughi, and A.R. Blake. 2014. Identifying when tagged fishes have been consumed by piscivorous predators: application of multivariate mixture models to movement parameters of telemetered fishes. Animal Biotelemetry, 2: 3.
Rose, B.P., G.S. Hansen, D.E. Ayers, and M.G. Mesa. 2014. Late summer and fall diet and condition of smallmouth bass, walleye, and channel catfish in the middle Columbia River, USA. Final Report of Research 2012. Bonneville Power Administration, Environment, Fish, and Wildlife Department. Project Number 2008-719-00, Contract Number 00054182. Reporting Period: September 2012 to August 2013.
Rutz, G.L., M.D. Sholtis, N.S. Adams, and J.W. Beeman. 2014. Investigation of methods of successful installation and operation of Juvenile Salmon Acoustic Telemetry System (JSATS) hydrophones in the Willamette River, Oregon, 2012. U.S. Geological Survey Open-File Report 2014-1112, 18 p., https://dx.doi.org/10.3133/ofr20141112
Tiffan, K.F., J.M. Erhardt, and S.J. St. John. 2014. Prey availability, consumption, and quality contribute to variation in growth of subyearling Chinook salmon rearing in riverine and reservoir habitats. Transactions of the American Fisheries Society, 143(1): 219-229.
Tiffan, K.F., W.P. Connor, B.J. Bellgraph, P.M. Chittaro. 2014. Snake River Fall Chinook salmon life history investigations, 1/1/2012 - 12/31/2012. Annual Report 2002-032-00. Bonneville Power Administration
Van Riper, C., III., J.R. Hatten, J.T. Giermakowski, D. Mattson, J.A. Holmes, M.J. Johnson, E.M. Nowak, K. Ironside, M. Peters, P. Heinrich, K.L. Cole, C. Truettner, and C.R. Schwalbe. 2014. Projecting climate effects on birds and reptiles of the Southwestern United States. U.S. Geological Survey Open-File Report 2014-1050, 100 p., https://dx.doi.org/10.3133/ofr20141050
Wargo Rub, A.M., N. Jepsen, T.L. Liedtke, M.L. Moser, and E.P. Scott Weber III. 2014. Surgical insertion of transmitters and telemetry methods in fisheries research. American Journal of Veterinary Research, 75(4): 402-416, https://dx.doi.org/10.2460/ajvr.75.4.402
Weigel, D.E., P.J. Connolly, and M.S. Powell. 2014. Fluvial rainbow trout contribute to the colonization of steelhead (Oncorhynchus mykiss) in a small stream. Environmental Biology of Fishes, 97(10): 1149-1159, https://dx.doi.org/10.1007/s10641-013-0204-9
Beeman, J.W., H.C. Hansel, A.C. Hansen, P.V. Haner, J.M. Sprando, C.D. Smith, S.D. Evans, and T.W. Hatton. 2013. Behavior and dam passage of juvenile Chinook salmon at Cougar Reservoir and Dam, Oregon, March 2011-February 2012. U.S. Geological Survey Open-File Report 2013-1079, 48 p.
Bellmore, J.R., C.V. Baxter, P. Connolly, and K.D. Martens. 2013. The floodplain food web mosaic: a study of its importance to salmon and steelhead with implications for their recovery. Ecological Applications, 23(1): 189-207.
Benjamin, J.R., L.A. Wetzel, K.D. Martens, K. Larsen, and P.J. Connolly. 2013. Spatio-temporal variability in movement, age, and growth of mountain whitefish (Prospoium williamsoni) in a river network based upon PIT tagging and otolith chemistry. Canadian Journal of Fisheries and Aquatic Sciences, 71(1): 131-140., https://dx.doi.org/10.1139/cjfas-2013-0279
Benjamin, J.R., P.J. Connolly, J.G. Romine, and R.W. Perry. 2013. Potential effects of changes in temperature and food resources on life history trajectories of juvenile Oncorhynchus mykiss. Transactions of the American Fisheries Society, 142(1): 208-220.
Christiansen, H.E., L.P. Gee, and M.G. Mesa. 2013. Anestesia of juvenile Pacific lampreys with MS-222, BENZOAK, AQUI-S 20E, and Aquacalm. North American Journal of Fisheries Management, 33(2): 269-276.
Connor, W.P., K.F. Tiffan, J.M. Plumb, and C.M. Moffitt. 2013. Evidence for density-dependent changes in growth, downstream movement, and size of Chinook salmon subyearlings in a large-river landscape. Transactions of the American Fisheries Society, 142(5): 1453-1468.
Erhardt, J.M., and D.L. Scarnecchia. 2013. Precision and accuracy of age and growth estimates based on fin rays, scales, and mark-recapture information for migratory Bull Trout. Northwest Science, 87(4): 307-316, https://dx.doi.org/10.3955/046.087.0402
Haskell, C.A., K.F. Tiffan, and D.W. Rondorf. 2013. The effects of juvenile American shad planktivory on zooplankton production in Columbia River food webs. Transactions of the American Fisheries Society, 142(3): 606-620.
Hatten, J.R., T.R. Batt, G.G. Scoppettone, and C.J. Dixon. 2013. An ecohydraulic model to identify and monitor Moapa dace habitat. PLoS ONE, 8(2): e55551. 12 p.
Holbrook, C.M., R.W. Perry, P.L. Brandes, N.S. Adams. 2013. Adjusting survival estimates for premature transmitter failure: a case study from the Sacramento-San Joaquin Delta. Environmental Biology of Fishes, 96(2-3): 165-173.
Jezorek, I.G., and P.J. Connolly. 2013. Hood River PIT-Tag Interrogation System efficiency study. Annual Report of U.S. Geological Survey Activities November 2011 - October 2012. Bonneville Power Administration, Division of Fish and Wildlife, Portland, OR. Contract No. 54741, Project No. 1988-053-03. BPA Document ID #P131652
Jezorek, I.G., and P.J. Connolly. 2013. Wind River Watershed Restoration. Annual Report November 2011 - October 2012. Bonneville Power Administration, Division of Fish and Wildlife, Portland, OR. Contract No. 55275, Project No. 1998-019-01. BPA Document ID #P133526.
Jezorek, I.G., and P.J. Connolly. 2013. Distribution and movement of Big Spring spinedace (Lepidomeda mollispinis pratensis) in Condor Canyon, Meadow Valley Wash, Nevada. Western North American Naturalist, 73(3): 323-326, https://dx.doi.org/10.3398/064.073.0306
Kock, T.J., J.M. Plumb, and N.S. Adams. 2013. Review of a model to assess stranding of juvenile salmon by ship wakes along the Lower Columbia River, Oregon and Washington. USGS Open-File Report 2013-1129, 20 p.
Kock, T.J., T.L. Liedtke, B.K. Ekstrom, D.W. Rondorf, C. Gleizes, W. Dammers. S. Gibbson, and J. Murphy. 2013. Behavior and movement of adult summer steelhead following collection and release, lower Cowlitz River, Washington, 2012 - 2013. USGS Open-File Report 2013-1116, 22 p.
Liedtke, T., C. Gibson, D. Lowry, and D. Fagergren (eds.). 2013. Conservation and ecology of marine forage fishes - Proceedings of a research symposium, September 2012. U.S. Geological Survey Open-File Report 2013-1035. 24 p.
Liedtke, T.L., T.J. Kock, and D.W. Rondorf. 2013. Evaluation of the behavior and movementt patterns of adult coho salmon and steelhead in the North Fork Toutle River, Washington, 2005-2009. U.S. Geological Survey Open-File Report 2013-1290, 26 p.
Mesa, M.G., L.K. Weiland, H.E. Christiansen, S.T. Sauter, and D.A. Beauchamp. 2013. Development and evaluation of a bioenergetics model for bull trout. Transactions of the American Fisheries Society, 142 (1): 41-49.
Mesa, M.G., L.P. Gee, L.K. Weiland, and H.E. Christiansen. 2013. Physiological responses of adult rainbow trout experimentally released through a unique fish conveyance device. North American Journal of Fisheries Management, 33(6): 1179-1183.
Parsley, M.J., and E. Koffoot. 2013. Capture of white sturgeon larvae downstream of The Dalles Dam, Columbia River, Oregon and Washington, 2012. U.S. Geological Survey Open-File Report 2013-1110, 12 p.
Parsley, M.J., and E. Kofoot. 2013. Effects of incubation substrates on hatch timing and success of White Sturgeon (Acipenser transmontanus) embryos. U.S. Geological Survey Scientific Investigations Report 2013-5180, 16 p.
Perry, R.W., J.M. Plum, S.D. Fielding, N.S. Adams, and D.W. Rondorf. 2013. Comparing effects of transmitters within and among populations: application to swimming performance of juvenile Chinook salmon. Transactions of the American Fisheries Society, 142(4): 901-911.
Romine, J.G., J.R. Benjamin, R.W. Perry, L. Casal, P.J. Connolly, and S.S. Sauter. 2013. Theoretical life history responses of juvenile Oncorhynchus mykiss to changes in food availability using a dynamic state-dependent approach. U.S. Geological Survey Open-File Report 2013-1154, 20 p.
Romine, J.G., R.W. Perry, S.J. Brewer, N.S. Adams, T.L. Liedtke, A.R. Blake, and J.R. Bureau. 2013. The regional salmon outmigration study - survival and migration routing of juvenile Chinook salmon in the Sacramento-San Joaquin River Delta during the winter of 2008 - 09. U.S. Geological Survey Open-File Report 2013-1142, 36 p.
Romine, J.G., R.W. Perry, and P.J. Connolly. 2013. Using broad landscape level features to predict redd densities of steelhead trout (Oncorhynchus mykiss) and Chinook Salmon (Oncorhynchus tshawytscha) in the Methow River watershed, Washington. U.S. Geological Survey Open-File Report 2013-1232, 22 p.
Rose, B.P., and M.G. Mesa. 2013. Effects of summer drawdown on the fishes larval chironomids in Beulah Resevoir, Oregon. Northwest Science, 87(3): 207-218, https://dx.doi.org/10.3955/046.087.0304
Tiffan, K.F., and J.R. Hatten. 2013. Estimates of subyearling Fall Chinook salmon rearing habitat in Lower Granite Reservoir. Prepared for the U.S. Army Corps of Engineers, Walla Walla District, Walla Walla, Washington 99362-1876, Contract Number W68SBV00829562, October 17, 2013. 28 p.
Voss, F., and A. Maule. 2013. Development of a database-driven system for simulating water temperature in the lower Yakima River main stem, Washington, for various climate scenarios. U.S. Geological Survey Open-File Report 2013-1010, 20 p.
Weigel, D.E., P.J. Connolly, K.D. Martens, and M.S. Powell. 2013. Colonization of steelhead in a natal stream after barrier removal. Transactions of the American Fisheries Society, 142(4): 920-930.
Weigel, D.E., P.J. Connolly, and M.S. Powell. 2013. The impact of small irrigation diversion dams on the recent migration rates of steelhead and redband trout (Oncorhynchus mykiss). Conservation Genetics, 14(6): 1255-1267.
Adams, N.S., H.C. Hansel, R.W. Perry, and S.D. Evans. 2012. A multi-year analysis of spillway survival for juvenile salmonids as a function of spill bay operations at McNary Dam, Washington and Oregon, 2004-09. U.S. Geological Survey Open-File Report 2012-1125, 68 p.
Adams, N.S., J.W. Beeman, and J.H. Eiler, (eds.). 2012. Telemetry Techniques: A User Guide for Fisheries Research. American Fisheries Society, 518 p.
Adams, N.S., J.W. Beeman, and J.H. Eiler, (eds.). 2012. Preface, in Adams, N.S., J.W. Beeman, and J.H. Eiler, eds., Telemetry Techniques - A user's guide for fisheries research. Bethesda, Maryland, American Fisheries Society, 518 p. ISBN: 978-1-934874-26-4.
Adams, N.S., J.W. Beeman, and J.H. Eiler, (eds.). 2012. Introduction, Chapter 1 in Adams, N.S., J.W. Beeman, and J.H. Eiler, eds., Telemetry Techniques - A user's guide for fisheries research. Bethesda, Maryland, American Fisheries Society, 518 p. ISBN: 978-1-934874-26-4.
Adams, N.S., and T.W. Hatton. 2012. A Markov chain analysis of the movements of juvenile salmonids in the forebay of McNary Dam, Washington and Oregon, 2006-09. U.S. Geological Survey Open-File Report 2012-1119, 102 p.
Adams, N.S., and T.W. Hatton. 2012. A Markov chain analysis of the movements of juvenile salmonids, including sockeye salmon, in the forebay of McNary Dam, Washington and Oregon, 2006-09. U.S. Geological Survey Open-File Report 2012-1120, 104 p.
Allen, M.B. 2012. An annotated bibliography for lamprey habitat in the White Salmon River, Washington. U.S. Geological Survey Open-File Report 2012-1086, 28 p.
Allen, M.B., J. Burkhardt, C. Munz, and P.J. Connolly. 2012. Fish population and habitat analysis in Buck Creek, Washington, prior to recolonization by anadromous salmonids after the removal of Condit Dam. U.S. Geological Survey Open-File Report 2012-1270, 38 p.
Beeman, J., S. Juhnke, G. Stutzer, and K. Wright. 2012. Effects of Iron Gate Dam discharge and other factors on the survival and migration of juvenile coho salmon in the lower Klamath River, northern California, 2006-09. U.S. Geological Survey Open-File Report 2012-1067, 96 p.
Beeman, J.W., A.C. Hansen, S.D. Evans, P.V. Haner, C.H. Hansel, and C.D. Smith. 2012. Passage probabilities of juvenile Chinook salmon through the powerhouse and regulating outlet at Cougar Dam, Oregon, 2011. U.S. Geological Survey Open-File Report 2012-1250, 36 p.
Beeman, J.W., B. Hayes, and K. Wright. 2012. Detection probability of an in-stream passive integrated transponder (PIT) tag detection system for juvenile salmonids in the Klamath River, northern California, 2011. U.S. Geological Survey Open-File Report 2012-1001, 14 p.
Beeman, J.W., E.E. Hockersmith, and J.R. Stevenson. 2012. Design and performance of radio telemetry systems for assessing juvenile fish passage at three hydroelectric dams, Chapter 6.5 in Adams, N.S., J.W. Beeman, and J.H. Eiler, eds., Telemetry Techniques - A user's guide for fisheries research. Bethesda, Maryland, American Fisheries Society, p. 281-304. ISBN: 978-1-934874-26-4
Beeman, J.W., H.C. Hansel, A.C. Hansen, P.V. Haner, J.M. Sprando, C.D. Smith, and S.D. Evans. 2012. Interim results from a study of the behavior of juvenile Chinook salmon at Cougar Reservoir and Dam, Oregon, March-August 2011. U.S. Geological Survey Open-File Report 2012-1106, 30 p.
Beeman, J.W., and R.W. Perry. 2012. Bias from false-positive detections and their removal in studies using telemetry, Chapter 9.5 in Adams, N.S., J.W. Beeman, and J.H. Eiler, eds., Telemetry Techniques - A user's guide for fisheries research. Bethesda, Maryland, American Fisheries Society, p 505-518. ISBN: 978-1-934874-26-4
Bellmore, J.R., C.V. Baxter, A. Ray, K. Tardy, L. Denny, and E. Galloway. 2012. Assessing the potential for salmon recovery via floodplain restoration: A multitrophic level comparison of dredge-mined to reference segments. Environmental Management, 49(3): 734-750.
Benjamin, J.R., and C.V. Baxter. 2012. A range-wide comparison shows nonnative brook trout exhibit greater density, biomass, and production than native inland cutthroat trout. Biological Invasions, 14(9): 1865-1879.
Benjamin, J.R., and C.V. Baxter. 2012. Is a trout a trout? A range-wide comparison shows nonnative brook trout exhibit greater density, biomass, and production than native inland cutthroat trout. Biological Invasions 14(9): 1865-1879., https://dx.doi.org/10.1007/s10530-012-0198-9
Castro-Santos, T., and R. Perry. 2012. Time-to-event analysis as a framework for quantifying fish passage performance, Chapter 9.1 in Adams, N.S., J.W. Beeman, and J.H. Eiler, eds., Telemetry Techniques - A user's guide for fisheries research. Bethesda, Maryland, American Fisheries Society, p 427-452. ISBN: 978-1-934874-26-4
Christiansen, H.E., L.P. Gee, and M.G. Mesa. 2012. Reducing fungal infections and testing tag loss in juvenile Pacific lampreys implanted with passive integrated transponders. Prepared for the U.S. Army Corps of Engineers, Portland District, Portland, OR. Study Code: LMP-08-02.
Clemens, B.J., M.G. Mesa, R.J. Magie, D.A. Young, and C.B. Schreck. 2012. Pre-spawning migration of adult Pacific lamprey, Entosphenus tridentatus, in the Willamette River, Oregon, U.S.A.. Environmental Biology of Fishes, 93(2): 245-254, https://dx.doi.org/10.1007/s10641-011-9910-3
Counihan, T.D., J.M. Hardiman, D.S. Burgess, K.E. Simmons, G. Holmberg, J.A. Rogala, and R.R. Polacek. 2012. Assessing native and introduced fish predation on migrating juvenile salmon in Priest Rapids and Wanapum Reservoirs, Columbia River, Washington, 2009-11. U.S. Geological Survey Open-File Report 2012-1130, 68 p.
Courter, I., T. Garrison, T. Kock, R. Perry. 2012. Evaluation of stream flow effects on smolt survival in the Yakima River Basin, Washington. Annual Report prepared for: Yakima Basin Joint Board, U.S. Bureau of Reclamation, System Operations Advisor Committee. Cramer Fish Sciences Report, 34 p.
Evans, S.D., and J.R. Stevenson. 2012. Optimization of radio telemetry receiving systems, Chapter 5.2 in Adams, N.S., J.W. Beeman, and J.H. Eiler, eds., Telemetry Techniques - A user's guide for fisheries research. Bethesda, Maryland, American Fisheries Society, p 139-161. ISBN: 978-1-934874-26-4
Hardiman, J.M., C.E. Walker, and T.D. Counihan. 2012. Developing a quality assurance plan for telemetry studies: A necessary management tool for the effective study, Chapter 9.3 in Adams, N.S., J.W. Beeman, and J.H. Eiler, eds., Telemetry Techniques - A user's guide for fisheries research. Bethesda, Maryland, American Fisheries Society, p. 477-490. ISBN: 978-1-934874-26-4
Hardiman, J.M., T.D. Counihan, D.S. Burgess, K.E. Simmons, G. Holmberg, J.A. Rogala, and R.R. Polacek. 2012. Assessing fish predation on migrating juvenile steelhead and a retrospective comparison to steelhead survival through the Priest Rapids Hydroelectric Project, Columbia River, Washington, 2009-11. U.S. Geological Survey Open-File Report 2012-1129, 36 p.
Hockersmith, E.E., and J.W. Beeman. 2012. A history of telemetry in fishery research, Chapter 2 in Adams, N.S., J.W. Beeman, and J.H. Eiler, eds., Telemetry Techniques - A user's guide for fisheries research. Bethesda, Maryland, American Fisheries Society, p. 7-20. ISBN: 978-1-934874-26-4
Jezorek, I.G., and P.J. Connolly. 2012. Hood River PIT-tag interrogation system efficiency study. Annual Report of U.S. Geological Survey Activities for November 2010-October 2011. Bonneville Power Administration Portland, OR. Contract No. 50150.
Jezorek. I.G., P.J. Connolly, and C.S. Munz. 2012. Wind River watershed restoration, Annual Report of U.S. Geological Survey Activities for November 2010 - October 2011. Bonneville Power Administation, Portland, OR. Contract No. 40481.
Kock, T.J., T.L. Liedtke, B.K. Ekstrom, R.G. Tomka, and D.W. Rondorf. 2012. Behavior and passage of juvenile salmonids during the evaluation of a behavioral guidance structure at Cowlitz Falls Dam, Washington, 2011. U.S. Geological Survey Open-File Report 2012-1030, 96 p.
Kock, T.J., T.L. Liedtke, D.W. Rondorf, J.D. Serl, M. Kohn, and K.A. Bumbaco. 2012. Elevated streamflows increase dam passage by juvenile coho salmon during winter: Implications of climate change in the Pacific Northwest. North American Journal of Fisheries Management, 32(6): 1070-1079., https://dx.doi.org/10.3133/ofr20141042
Kohler, A.E., T.N. Pearsons, J.S. Zendt, M.G. Mesa, C.L. Johnson, and P.J. Connolly. 2012. Nutrient enrichment with salmon carcass analogs in the Columbia River basin, USA: A stream food web analysis. Transactions of the American Fisheries Society, 141(3): 802-824.
Lepori, F., J.R. Benjamin, K.D. Fausch, and C.V. Baxter. 2012. Are invasive and native trout functioanlly equivalent predators? Results and lessons from a field experiment. Aquatic Conservation : Marine and Freshwater Ecosystems, 22(6): 787-798, https://dx.doi.org/10.1002/aqc.2259
Liedtke, T.L. 2012. Western Fisheries Research Center - Forage fish studies in Puget Sound. U.S. Geological Survey Fact Sheet 2012-3023, 2 p.
Liedtke, T.L., J.W. Beeman, and L.P. Gee. 2012. A standard operating procedure for the surgical implantation of transmitters in juvenile salmonids. U.S. Geological Survey Open-File Report 2012-1267, 50 p.
Liedtke, T.L., and A.M. Wargo Rub. 2012. Techniques for telemetry transmitter attachment and evaluation of transmitter effects on fish performance, Chapter 4 in Adams, N.S., J.W. Beeman, and J.H. Eiler, eds., Telemetry Techniques - A user's guide for fisheries research. Bethesda, Maryland, American Fisheries Society, p 45-87. ISBN: 978-1-934874-26-4
Mesa, M.G., B.P. Rose, and E.S. Copeland. 2012. Field-based evaluations of horizontal flat-plate fish screens, II: Testing of a unique off-stream channel device - the Farmers screen. North American Journal of Fisheries Management, 32(3): 604-612.
Mesa, M.G., E.S. Copeland, H.E. Christiansen, J.L. Gregg, S.R. Roon, and P.K. Hershberger. 2012. Survival and growth of juvenile Pacific lampreys tagged with passive integrated transponders (PIT) in freshwater and seawater. Transactions of the American Fisheries Society, 141(5): 1260-1268., https://dx.doi.org/10.1080/00028487.2012.686951
Patricio, H.C., S.M. Ainsley, M.E. Andersen, J.W. Beeman, and D.A. Hewitt. 2012. The Mekong Fish Network - Expanding the capacity of the people and institutions of the Mekong River basin to share information and conduct standardized fisheries monitoring. U.S. Geological Survey Open-File Report 2012-1246, 36 p.
Perry, R.W., J.G. Romine, N.S. Adams, A.R. Blake, J.R. Burau, S.V. Johnston, and T.L. Liedtke. 2012. Using a non-physical behavioural barrier to alter migration routing of juvenile Chinook salmon in the Sacramento-San Joaquin River Delta. River Research and Applications, 30(2): 192-203, https://dx.doi.org/10.1002/rra.2628
Perry, R.W., J.G. Romine, S.J. Brewer, P.E. LaCivita, W.N. Brostoff, and E.D. Chapman. 2012. Survival and migration route probabilities of juvenile Chinook salmon in the Sacramento-San Joaquin River Delta during the winter of 2009-10. U.S. Geological Survey Open-File Report 2012-1200, 30 p.
Perry, R.W., J.G. Romine., and T.L. Liedtke. 2012. 2011 Section 2.4.4. - Fish and Fish Tagging, Section 2.7.3 - Generalized linear modeling of tagged fish fates, Section 2.7.4 - survival and route entrainment probability analysis, Section 3.2 - fish transport, tagging, and release, Section 3.5 - generalized linear model, and Section 3.6 - survival and route entrainment probabilities, in Georgiana Slough non-physical barrier performance evaluation project report. California Department of Water Resources, Sacramento, CA. 228 p.
Perry, R.W., T. Castro-Santos, C.M. Holbrook, and B.P. Sandford. 2012. Using mark-recapture models to estimate survival from telemetry data, Chapter 9.2 in Adams, N.S., J.W. Beeman, and J.H. Eiler, eds., Telemetry Techniques - A user's guide for fisheries research. Bethesda, Maryland, American Fisheries Society, p 453-475. ISBN: 978-1-934874-26-4
Plumb, J.M., W.P. Connor, K.F. Tiffan, C.M. Moffitt, R.W. Perry, and N.S. Adams. 2012. Estimating and predicting collection probability of fish at dams using multistate modeling. Transactions of the American Fisheries Society, 141(5): 1364-1373, https://dx.doi.org/10.1080/00028487.2012.694828
Risley, J.C., S.J. Brewer, and R.W. Perry. 2012. Simulated effects of dam removal on water temperatures along the Klamath River, Oregon and California, using 2010 Biological Opinion flow requirements. U.S. Geological Survey Open-File Report 2011-1311, 18 p.
Rose, B.P., G.S. Hansen, M.H. Weaver, D.E. Ayers, E.S. Van Dyke, and M.G. Mesa. 2012. Understanding the influence of predation on introduced fishes on juvenile salmonids in the Columbia River Basin: closing some knowledge gaps. Late summer and fall diet and condition of smallmouth bass, walleye, and channel catfish in the middle Columbia River. Interim Report of Research 2011. Prepared for the U.S. Department of Energy, Bonneville Power Administration, Environment, Fish, and Wildlife Department. Contract No. 50502, Project No. 2008-719-00.
Rose, B.P., G.S. Hansen, and M.G. Mesa. 2012. Understanding the influence of predation by introduced fishes on juvenile salmonids in the Columbia River Basin: closing some knowledge gaps. Interim Report of Research 2010. Prepared for the U.S. Department of Energy, Bonneville Power Administration, Environment, Fish, and Wildlife Department. Contract No. 50502, Project No. 2008-719. Reporting Period: September 2010-August 2011. 49 p.
Rose, B.P., and M.G. Mesa. 2012. Effectiveness of common fish screen materials to protect lamprey ammocoetes. North American Journal of Fisheries Management, 32(3): 597-603.
Steig, T.W., and C.M. Hollbrook. 2012. Use of acoustic telemetry to evaluate survival and behavior of juvenile salmonids at hydroelectric dams: A case study from Rocky Reach Dam, Columbia River, USA, Chapter 8.1 in Adams, N.S., J.W. Beeman, and J.H. Eiler, eds., Telemetry Techniques - A user's guide for fisheries research. Bethesda, Maryland, American Fisheries Society, p 368-387. ISBN: 978-1-934874-26-4
Tibbits, W.T., K.D. Martens, and P.J. Connolly. 2012. Monitoring of stream restoration habitat on the main stem of the Methow River, Washington, during the pre-treatment phase (October 2008 - May 2012) with a progress report for activities from March 2011 to November 2011. U.S. Geological Survey Open-File Report 2012-1108, 16 p.
Tiffan, K.F., T.J. Kock, W.P. Connor, F.Mullins, and R.K. Steinhorst. 2012. Downstream movement of fall Chinook salmon juveniles in the lower Snake River reservoirs during winter and early spring. Transactions of the American Fisheries Society, 141(2): 285-293.
Tiffan, K.F., W.P. Connor, and B.J. Bellgraph. 2012. Snake River fall Chinook salmon life history investigations. Annual Report 2011. U.S. Department of Energy, Bonneville Power Administration, Environment, Fish and Wildlife Department, Portland, OR. Project No. 2002033200.
Tiffan, K.F., W.P. Connor, and R.A. Buchanan. 2012. Snake River fall Chinook salmon life history investigations. Annual Report 2010. U.S. Department of Energy, Bonneville Power Administration, Environment, Fish and Wildlife Department, Portland, OR. Project No. 2002033200.
Tiffan, K.F., and W.P. Connor. 2012. Seasonal use of shallow water habitat in the Lower Snake River Reservoirs by juvenile fall Chinook salmon. U.S. Army Corps of Engineers, Walla Walla District, Walla Walla, WA. Contract No. W68SBV00829562. 74 p.
Waste, S., and R. Reagan. 2012. The Columbia River Research Laboratory. U.S. Geological Survey Fact Sheet 2012-3022, 2 p.
Adams, N.S., C.E. Walker, and R.W. Perry. 2011. A multi-year analysis of passage and survival at McNary Dam, 2004-09. U.S. Geological Survey Open-File Report 2011-1230, 122 p.
Adams, N.S., and Evans, S.D., eds. 2011. Summary of Juvenile Salmonid Passage and Survival at McNary Dam - Acoustic Telemetry Studies, 2006-09. U.S. Geological Survey Open-File Report 2011-1179, 144 p.
Allen, M.B., and P.J. Connolly. 2011. Composition and relative abundance of fish species in the Lower White Salmon River, Washington, prior to the removal of Condit Dam. U.S. Geological Survey Open-File Report 2011-1087, 32 p.
Barber, J.J., G.G. Gerow, P.J. Connolly, and S.Singh. 2011. Estimating the hatchery fraction of a natural population: A Bayesian approach. North American Journal of Fisheries Management, 31(5): 934-942.
Beeman, J., H. Hansel, R. Perry, E. Hockersmith, and B. Sandford. 2011. Analyses of potential factors affecting survival of juvenile salmonids volitionally passing through turbines at McNary and John Day Dams, Columbia River. U.S. Geological Survey Open-File Report 2011-1227, 124 p.
Beeman, J.W., T.J. Kock, and R.W. Perry, and S.G. Smith. 2011. Analysis of dam-passage survival of yearling and subyearling Chinook salmon and juvenile steelhead at The Dalles Dam, Oregon, 2010. U.S. Geological Survey Open-File Report 2011-1162, 38 p.
Connolly, P.J., and I.G. Jezorek. 2011. Wind River Watershed Restoration, Annual Report November 2009 to October 2010. Bonneville Power Administration, Portland, OR. BPA Project No. 1998-019-01, Contract Nos. 46102 and 50481.
Dixon, C.M., and M.G. Mesa. 2011. Survival and tag loss in Moapa White River springfish implanted with passive integrated transponder tags. Transactions of the American Fisheries Society, 140(5): 1375-1379.
Hamilton, J., D. Rondorf, M. Hampton, R. Quinones, J. Simondet, and T. Smith. 2011. Synthesis of the effects to fish species of two management scenarious for the Secretarial Determination on removal of the lower four dams on the Klamath River. Prepared by the Biological Subgroup for the Secretarial Determination Regarding Potential Removal fo the Lower Four Dams on the Klamath River. 175 p.
Haskell, C.A., and K.F. Tiffan. 2011. Project planning for Cougar Dam during 2010. Final report to the U.S. Army Corps of Engineers, Portland, OR, Contract W66QKZ01730245.
Haskell, C.A., and K.F. Tiffan. 2011. Crims Island-Restoration and monitoring of juvenile salmon rearing habitat in the Columbia River Estuary, Oregon, 2004-10. U.S. Geological Survey Scientific Investigations Report 2011-5022.
Haskell, C.A., and K.F. Tiffian. 2011. Crims Island - Restoration and monitoring of juvenile salmon rearing habitat in the Columbia River Estuary, Oregon, 2004-10. Geological Survey Scientific Investigations Report 2011-5022, 50 p.
Jezorek, I.G., P.J. Connolly, C.S. Munz, and C. Dixon. 2011. Big Spring spinedace and associated fish populations and habitat conditions in Condor Canyon, Meadow Valley Wash, Nevada. U.S. Geological Survey Open-File Report 2011-1072, 116 p.
Kock, T.J., J.A. Henning, T.L. Liedtke, I.M. Royer, B.K. Ekstrom, and D.W. Rondorf. 2011. Behavior and movement of formerly landlocked juvenile coho salmon after release into the free-flowing Cowlitz River, Washington. Northwestern Naturalist, 92(3): 167-174.
Liedtke, T.L. , C.D. Smith, and D.W. Rondorf. 2011. Chapter 6. Stable isotopes of nitrogen and carbon as tools to monitor eutrophication and trophic dynamics.. Pages 69-84 in R. Takesue, ed., Hydrography of and biogeochemical inputs to Liberty Bay, a small urban embayment in Puget Sound, Washington. U.S. Geological Survey Scientific Investigations Report 2011-5152, 98 p.
Liedtke, T.L., T.J. Kock, B.K. Ekstrom, R.G. Tomka, and D.W. Rondorf. 2011. Evaluation of angler effort and harvest of rainbow trout (Oncorhynchus mykiss), Lake Scanewa, Washington, 2010. U.S. Geological Survey Open-File Report 2011-1178, 24 p.
Mesa, M.G., E.S. Copeland, and H.E. Christiansen. 2011. Development of standard protocols for tagging juvenile lampreys with passive integrated transponder (PIT) Tags. Prepared for the U.S. Army Corps of Engineers, Portland District. Study Code: LMP-08-02.
Mesa, M.G., R.J. Magie, E.S. Copeland, and H.E. Christiansen. 2011. Surgical wound healing in radio-tagged adult Pacific lamprey Entosphenus tridentatus held on different substrata. Journal of Fish Biology, 79(4): 1068-1075.
Mesa, M.G., and H.E. Christiansen. 2011. Inventory and suitability of facilities within the Mid-Columbia Basin for the artificial propagation of Pacific lampreys. Pacific lamprey artificial propagation, project detailed report information, Chelan County PUD, Rocky Reach Hydroelectric Project FERC Project No. 2145. 150 p.
Munz, C.S., M.B. Allen, and P.J. Connolly. 2011. Movement of bull trout in the upper Jarbidge River watershed, Idaho and Nevada, 2008-09 - A supplement to Open-File Report 2010-1033. U.S. Geological Survey Open-File Report 2011-1090.
Parsley, M.J., E. Kofoot, T.J. Blubaugh. 2011. Mid Columbia sturgeon incubation and rearing study (Year 2). Study Period: April 2010 to March 2011. BChydro Columbia River Project Water Use Plan, Lower Columbia River Fish Management Plan, Reference: CLBMON#27.
Parsley, M.J., N.D. Popoff, and J.G. Romine. 2011. Short-term response of subadult white sturgeon to hopper dredge disposal operations. North American Journal of Fisheries Management, 31: 1-11.
Parsley, M.J., N.D. Popoff, and J.G. Romine. 2011. Short-term response of subadult white sturgeon to hopper dredge disposal operations. North American Journal of Fisheries Management, 31(1): 1-11.
Parsley, M.J., S.T. Sauter, L.A. Wetzel. 2011. Impact of American shad in the Columbia River. Final Report Performance Period: May 1, 2007 - January 15, 2011. Prepared for U.S. Department of Energy, Bonneville Power Administration, Portland, OR. Contract Nos. 00036371, 0004154, 00045991, Project No. 2007-275-00. 121 p.
Perry, R.W., J.C. Risley, S.J. Brewer, E.C. Jones, and D.W. Rondorf. 2011. Simulating daily water temperatures of the Klamath River under dam removal and climate change scenarios. U.S. Geological Survey Open-File Report 2011-1243, 56 p.
Sauter, S.T.. 2011. Chapter 3: Development of a bioenergetics model for age-0 American shad. Pages 54-88 in Parsley, M.J., S.T. Sauter, and L.A. Wetzel, (eds). Impact of American shad in the Columbia River, Final Report. Bonneville Power Administration, Portland, OR. Document ID #P121252. Project No. 2007-275-000
Sauter, S.T. and L.A. Wetzel. 2011. Chapter 2: Growth characteristics and otolith analysis on age-0 American shad. Pages 39-53 in Parsley, M.J., S.T. Sauter, and L.A. Wetzel, (eds). Impact of American shad in the Columbia River, Final Report. Bonneville Power Administration, Portland, OR. Document ID #P121252. Project No. 2007-275-000
Sauter, S.T., T.J. Blubaugh, and M.J. Parsley. 2011. Chapter 1: Diet of juvenile and adult American shad in the Columbia River. Pages 9-38 in Parsley, M.J., S.T. Sauter, and L.A. Wetzel, (eds). Impact of American shad in the Columbia River, Final Report. Bonneville Power Administration, Portland, OR. Document ID #P121252. Project No. 2007-275-000
Simenstad, C.A., J.L. Burke, J.E. O'Connor, C. Cannon, D.W. Heatwole, M.F. Ramirez, I.R. Waite, T.D. Counihan, and K.L. Jones. 2011. Columbia River Estuary Ecosystem Classification - Concept and application. U.S. Geological Survey Open-File Report 2011-1228, 60 p.
Tiffan, K.F., and W.P. Connor. 2011. Distinguishing between natural and hatchery Snake River fall Chinook salmon subyearlings in the field using body morphology. Transactions of the American Fisheries Society, 140: 21-30.
Wiseman, S., E.H. Jorgensen, A.G. Maule, and M.M. Vijayan. 2011. Contaminant loading in remote Arctic lakes affects cellular stress-related proteins expression in feral charr. Polar Biology, 34(6): 933-937.
Wright, K., S. Juhnke, H. Hansel, J. Beeman, and N. Hetrick. 2011. Effect of dietary salt on migration and survival of yearling steelhead produced at Iron Gate hatchery, Klamath River, 2009. U.S. Fish and Wildlife Service, Arcata Fisheries Technical Report TR2011-15.
Adams, N. 2010. Procedures for conducting underwater searches for invasive mussels (Dreissena sp.). U.S. Geological Survey Open-File Report 2010-1308, 44 p.
Adams, N.S., and T.L. Liedtke. 2010. Juvenile salmonid survival, passage, and egress at McNary Dam during tests of temporary spillway weirs, 2009. U.S. Army Corps of Engineers, Anadromous Fish Evaluation Program Report, June 2010. Report No. 2010-W68SBV90070150.
Allen, M.B., P.J. Connolly, M.G. Mesa, J. Charrier, C. Dixon. 2010. Distribution and movement of bull trout in the upper Jarbidge River watershed, Nevada. U.S. Geological Survey Open-File Report 2010-1033, 80 p.
Beeman, J.W., A.C. Braatz, H.C. Hansel, S.D. Fielding, P.V. Haner, G.S. Hansen, D.J. Shurtleff, J.M. Sprando, and D.W. Rondorf. 2010. Approach, Passage, and Survival of Juvenile Salmonids at Little Goose Dam, Washington: Post-Construction Evaluation of a Temporary Spillway Weir, 2009. U.S. Geological Survey Open-File Report 2010-1224, 100 p.
Connolly, P.J. 2010. Guidelines for calculating and enhancing detection efficiency of PIT tag interrogation systems. Pages 119-125 in Wolf, K.S., and J.S. O'Neal, (eds.). PNAMP Special Publication: Tagging, Telemetry and Marking Measures for Monitoring Fish Populations - A compendium of new and recent science for use in informing technique and decision modalities. Pacific Northwest Aquatic Monitoring Partnership Special Publication 2010-002, Chapter 7.
Connolly, P.J., I.G. Jezorek, and C.S. Munz. 2010. Wind River water restoration, Annual report November 2008 to October 2009. Bonneville Power Administration, Portland, OR. Contract No.s 41038 and 46102, Project No. 1998-019-01, 10 p.
Evans, S.D., C.E. Walker, S.J. Brewer, and N.S. Adams. 2010. Assessing survival of Mid-Columbia River released juvenile salmonids at McNary Dam, Washington, 2008-09. U.S. Geological Survey Open-File Report 2010-1237, 60 p.
Giorgi, A., J. Skalski, C. Peven, M. Langeslay, S. Smith, T. Counihan, R. Perry, S. Bickford. 2010. Chapter 3. - Guidelines for conducting smolt survival studies in the Columbia River. Pages 47-68 in K. Wolf and J. O'Neal (eds.), PNAMP Special Publication: Tagging, Telemetry and Marking Measures for Monitoring Fish Populations.
Hatten, J.R., E.H. Paxton, and M.K. Sogge. 2010. Modeling the dynamic habitat and breeding population of Southwestern Willow Flycatcher. Ecological Modelling, 221: 1674-1686.
Hatten, J.R., and T.R. Batt. 2010. Hydraulic alterations resulting from hydropower development in the Bonneville Reach of the Columbia River. Northwest Science, 84(3): 207-222.
Hershberger, P.K., B.K. van der Leeuw, J.L. Gregg, C.A. Grady, K.M. Lujan, S.K. Gutenberger, M.K. Purcell, J.C. Woodson, J.R. Winton, and M.J. Parsley. 2010. Amplification and transport of an endemic fish disease by an introduced species. Biological Invasions, 12(11): 3665-3675.
Jepson, M.A., C.C. Caudill, T.S. Clabough, C.A. Peery, J.W. Beeman, and S. Fielding. 2010. Adult Chinook salmon passage at Little Goose Dam in relation to spill operations - 2008. Technical Report 2009-6. U.S. Army Corps of Engineers, Walla Walla District, Walla Walla, WA. 50 p.
Jezorek, I.G., and P.J. Connolly. 2010. Wild steelhead and introduced spring Chinook salmon in the Wind River, Washington: overlapping populations and interactions. Technical report Bonneville Power Administration, Portland, OR, Project No. 1998019.
Liedtke, T.L., T.J. Kock, B.K. Ekstrom, I.M. Royer, and D.W. Rondorf. 2010. Juvenile salmonid collection efforts in the Upper Cowlitz River Basin: 2009 evaluations. Cowlitz River Project Tacoma Power Report Series No. 2010-01. January 2010.
Martens, K.M., and P.J. Connolly. 2010. Effectiveness of a redesigned water diversion using rock vortex weirs to enhance longitudinal connectivity for small salmonids. North American Journal of Fisheries Management, 30(6): 1544-1552.
Mesa, M.G., B.P. Rose, and E.S. Copeland. 2010. Biological evaluations of an off-stream channel, horizontal flat-plate fish screen - The Farmers Screen. U.S. Geological Survey Open-File Report 2010-1042, 16 p.
Mesa, M.G., J.M. Bayer, M.B. Bryan, and S.A. Sower. 2010. Annual sex steroid and other physiological profiles of Pacific lampreys (Entosphenus tridentatus). Comparative Biochemistry and Physiology, A: Comparative Physiology, 155(1): 56-63.
Mesa, M.G., R.J. Magie, and E.S. Copeland. 2010. Passage and behavior of radio-tagged adult Pacific lampreys (Entosphenus tridentatus) at the Willamette Falls Project, Oregon.. Northwest Science, 84(3): 233-242.
Mesa, M.G., and C.J. Dixon. 2010. Influence of a low intensity electric sea lion deterrence system on the migratory behavior of fishes in the upstream migrant tunnel (UMT) at Bonneville Dam. Bonneville Power Administration, Portland, OR. Document ID #P119148. 18p.
Mesa, M.G., and E.S. Copeland. 2010. Influence of a weak field of pulsed DC electricity on the behavior and incidence of injury in adult steelhead and Pacific lamprey. Bonneville Power Administration, Environment, Fish and Wildlife Publication, February 2009. Document ID No. P110326.
Parsley, M. 2010. Columbia River Project Water Use Plan. Mid Columbia River Sturgeon Incubation and Rearing Study (Year 1). Columbia River White Sturgeon Management Plan. BC Hydro Report Number: CLBMON-27. 31 p.
Parsley, M.J., B.K. van der Leeuw, and D.G. Elliott. 2010. Characterization of the Contents and Histology of the Gastrointestinal Tracts of White Sturgeon (Acinpenser transmontanus) Captured from Upper Lake Roosevelt, Washington, October 2008. U.S. Geological Survey Open-File Report 2010-1193, 24 p.
Perry, R.W., J.R. Skalski, P.L. Brandes, P.T. Sandstrom, A.P. Klimley, A. Ammann, and B. MacFarlane. 2010. Estimating survival and migration route probabilities of juvenile Chinook salmon in the Sacramento-San Joaquin River Delta. North American Journal of Fisheries Management, 30(1): 142-156.
Rondorf, D.W., G.L. Rutz, and J.C. Charrier. 2010. Minimizing effects of over-water docks on federally listed fish stocks in McNary Reservoir: A literature review for criteria. U.S. Army Corps of Engineers, December 2009, Report No. 2009-W68SBV91602084.
Sauter, S.T., and P.J. Connolly. 2010. Growth, condition factor, and bioenergetics modeling link warmer stream temperatures below a small dam to reduced performance of juvenile steelhead. Northwest Science, 84: 369-377.
Tiffan, K.F., T.J. Kock, and J.J. Skalicky. 2010. Diel behavior of rearing fall Chinook salmon. Northwestern Naturalist, 91: 342-345.
Tiffan, K.F., W.P. Connor, B.J. Bellgraph, and R.A. Buchanan. 2010. Snake River fall Chinook salmon life history investigations. Annual report 2009. Bonneville Power Administration, Portland, OR, Project No. 200203200.
Wells, S., T.D. Counihan, A. Puls, M. Sytsma, and B. Adair. 2010. Prioritizing zebra and quagga mussel monitoring in the Columbia River Basin. Bonneville Power Administration, Environment, Fish & Wildlife Publication, April 2010.
Wolf, K.S., and S.M. Waste. 2010. Chapter 1. - Introduction: Tagging, Telemetry, and Marking Compendium Project. Pages 1-4 in K. Wolf and J. O'Neal (eds.), PNAMP Special Publication: Tagging, Telemetry and Marking Measures for Monitoring Fish Populations.
Adams, N. S. and T. D. Counihan, (eds.). 2009. Survival and migration behavior of juvenile salmonids at McNary Dam, 2007. U. S. Army Corps of Engineers, Walla Walla, WA, Contract No. W68SBV70178419, 209 p.
Adams, N.S. and T. Liedtke. 2009. Juvenile salmonid survival, passage, and egress at McNary Dam during tests of temporary spillway weirs, 2008. U.S. Army Corps of Engineers, Anadromous Fish Evaluation Program Report, October 2009. Report No. 2008-W68SBV80448890.
Beeman, J., S. Juhnke, G. Stutzer, and N. Hetrick. 2009. Survival and migration behavior of juvenile coho salmon in the Klamath River relative to discharge at Iron Gate Dam, Northern California 2007. U.S. Geological Survey Open-File Report 2008-1332, 72 p.
Beeman, J.W., A.C. Braatz, S.D. Fielding, H.C. Hansel, S.T. Brown, G.T. George, P.V. Haner, G.S. Hansen, and D.J. Shurtleff. 2009. Passage, survival, and approach patterns of juvenile salmonids at Little Goose Dam. U.S. Army Corps of Engineers Anadromous Fish Evaluation Report 2007. Contract No. W68SBV60317747.
Beeman, J.W., H. Hansel, and S. Juhnke. 2009. Summary of migration and survival data from radio-tagged juvenile coho salmon in the Trinity River, northern California, 2008. U.S. Geological Survey Open-File Report 2009-1092, 26 p.
Beeman, J.W., S. Juhnke, and H.C. Hansel. 2009. Summary of survival data from juvenile coho salmon in the Klamath River, northern California, 2008. U.S. Geological Survey Open-File Report 2009-1019, 6 p.
Beeman, J.W., and S.D. Juhnke. 2009. Summary of survival data from juvenile coho salmon in the Klamath River, northern California, 2009. U.S. Geological Survey Open-File Report 2009-1270, 8 p.
Foott, S., G. Stutzer, R. Fogerty, H. Hansel, S. Juhnke, and J. Beeman. 2009. Pilot study to access the role of Ceratomyxa shasta infection in mortality of fall-run Chinook smolts migrating through the lower Klamath River in 2008. Joint U.S. Fish and Wildlife Service/U.S. Geological Survey Technical Report. U.S. Fish and Wildlife Services, California-Nevada Fish Health Center.
Gadomski, D.M. and P.G. Wagner. 2009. Factors affecting the age-0 resident fish community along shorelines of the Hanford Reach of the Columbia River. Northwest Science, 83(3): 180-188.
Hardiman, J.M., C.E. Walker, E.C. Jones, T.D. Counihan, and N.S. Adams. 2009. Assessing survival for Mid-Columbia River released juvenile salmonids at McNary Dam in 2006 and 2007. U.S. Army Corps of Engineers, Anadromous Fish Evaluation Program Report, October 2009. Report No. 2008-W68SBV80448890.
Haskell, C.A., and K.F. Tiffan. 2009. Westport Slough tide gate evaluation. U.S. Army Corps of Engineers, Anadromous Fish Evaluation program Report, September 2009. Report No. 2009-W66QKZ90136544.
Hatten, J.R. 2009. Mapping and monitoring Mt. Graham Red Squirrel habitat with GIS and thematic mapper imagery. Sanderson, H.R., and J.L. Koprowski (eds.). Pages 170 -184 in The Last Refuge of the Mt. Graham Red Squirrel: Ecology of Endangerment. The University of Arizona Press, Tucson, AZ.
Hatten, J.R., E.H. Paxton, and M. Sogge. 2009. Using GIS/remote sensing models to quantify and monitor Southwestern Willow Flycatcher breeding habitat (poster abstract). Pages 23-24 in Brady, S.R. (ed). 2009, Proceedings of the Second All-USGS Modeling Conference, February 11-14, 2008 - Painting the Big Picture. U.S. Geological Survey Scientific Investigations Report 2009-5013.
Hatten, J.R., K.F. Tiffan, D.R. Anglin, S.L. Haeseker, J.J. Skalicky, and H. Schaller. 2009. A spatial model to assess the effects of hydropower operations on Columbia River Fall Chinook salmon spawning habitat. North American Journal of Fisheries Management, 29(5): 1379-1405.
Hatten, J.R., and M.J. Parsley. 2009. A spatial model of white sturgeon rearing habitat in the lower Columbia River, USA. Ecological Modelling, 220(24): 3638-3646.
Holbrook, C.M., R.W. Perry, and N.S. Adams. 2009. Distribution and joint fish-tag survival of juvenile Chinook salmon migrating through the Sacramento-San Joaquin River Delta, California, 2008. U.S. Geological Survey Open-File Report 2009-1204, 30 p.
Jezorek, I.G., C.S. Munz, and P.J. Connolly. 2009. Wind River watershed restoration, annual report April 2007 to October 2008. Bonneville Power Administration. Project No. 1998-019-01. November 2009.
Kock, T.J., S.D. Evans, T.L. Liedtke, D.W. Rondorf, and M. Kohn. 2009. Evaluation of strobe lights to reduce turbine entrainment of juvenile steelhead (Oncorhynchus mykiss) at Cowlitz Falls Dam, Washington. Northwest Science, 83(4): 308-314.
Liedtke, T.L., C.D. Smith, and R.G. Tomka. 2009. Tailrace egress and hydraulic conditions during tests of a top spillway weir (TSW) at John Day Dam, 2008. U.S. Army Corps of Engineers, Anadromous Fish Evaluation Program, Report 2008, Portland OR. Contract No. W66QKZ81078621.
Liedtke, T.L., T.J. Kock, B.K. Ekstrom, and D.W. Rondorf. 2009. Behavior and passage of juvenile salmonids during the evaluation of a fish screen at Cowlitz Falls Dam, Washington, 2008. Cowlitz River Project Tacoma Power Report Series No. 2009-01. April 2009.
Maule, A.G., S.P. VanderKooi, J.B. Hamilton, R. Stocking, and J. Bartholomew. 2009. Physiological development and vulnerability to Ceratomyxa shasta of fall-run Chinook salmon in the Upper Klamath River watershed. North American Journal of Fisheries Management, 29(6): 1743-1756.
Mesa, M.G., R.J. Magie, and E.S. Copeland. 2009. Passage and behavior of radio-tagged adult Pacific lamprey (Entosphenus tridentata) at the Wilamette Falls Project, Oregon, 2005-07. U.S. Geological Survey Open-File Report 2009-1223, 28 p.
Mesa, M.G., and E.S. Copeland. 2009. Critical uncertainties and research needs for the restoration and conservation of native lampreys in North America. In Biology, Management, and Conservation of Lampreys in North America. In Biology, Management, and Conservation of Lampreys in North America. Brown, L., S. Chase, M. Mesa, R. Beamish, and P. Moyle, (eds.) Americn Fisheries Society Symposium 72. 321 p.
Parsley, M.J. 2009. Detections of acoustic-tagged green sturgeon in Baker Bay on the lower Columbia River during September-November 2008. U.S. Geological Survey Open-File Report 2009-1026, 10 p.
Puls, A.L., T.D. Counihan, C.E. Walker, J.M. Hardiman, and I.N. Duran. 2009. Survival and migration behavior of subyearling Chinook salmon at Lower Granite Dam. U.S. Army Corps of Engineers Anadromous Fish Evaluation Report 2007, Contract No. W68SBV70198655.
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Tiffan, K.F., T.J. Kock, C.A. Haskell, W.P. Connor, and R.K. Steinhorst. 2009. Water velocity, turbulence, and migration rate of subyearling fall Chinook salmon in the free-flowing and impounded Snake River. Transactions of the American Fisheries Society, 138(2): 373-384.
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Tiffan, K.F., W.P. Connor, B.J. Bellgraph, and R.A. Buchanan. 2009. Snake River fall Chinook salmon life history investigations, annual report 2008. PNNL-18924, Pacific Northwest National Laboratory, Richland, WA. Project No. 200203200.
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Brenkman, S.J., and P.J. Connolly. 2008. Protocol for monitoring fish assemblages in Pacific Northwest national parks. U.S. Geological Survey Techniques and Methods 2-A7, 130 p.
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Connolly, P.J., I.G. Jezorek, K.D. Martens, and E.F. Prentice. 2008. Measuring the performance of two stationary interrogation systems for detecting downstream and upstream movement of PIT-tagged salmonids. North American Journal of Fisheries Management, 28(2): 402-417., https://dx.doi.org/10.1577/M07-008.1
Connolly, P.J., I.G. Jezorek, and C.S. Munz. 2008. Wind River Watershed Restoration: Annual report April 2006 to March 2007. Bonneville Power Administration, Division of Fish and Wildlife, Portland, OR. BPA Contract No. 26922, Project No. 1998-019-01. 28 p.
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Hansel, H.C, S.D. Juhnke, P.V. Haner, L. Dingmon, and J.W. Beeman. 2008. Estimates of fish-, spill-, and sluiceway-passage efficiencies of radio-tagged juvenile Chinook salmon during spring and summer at The Dalles Dam in 2004: Draft final report of research. U.S. Army Corps of Engineers, Environmental Resources Branch, Portland, OR. Contract No. W66QKZ403369586. 106 p.
Hansel, H.C., J.W. Beeman, B.J. Hausmann, S.D. Juhnke, P.V. Haner, and J.L. Phelps. 2008. Estimates of fish-, spill-, and sluiceway-passage efficiencies of radio-tagged juvenile Chinook salmon during spring and summer at The Dalles Dam in 2003: Draft final report of research. U.S. Army Corps of Engineers, Environmental Resources Branch, Portland, OR. Contract No. W66QKZ403369586. 95 p.
Hansel, H.C., S.D. Juhnke, P.V. Haner, L. Dingmon, and J.W. Beeman. 2008. Estimates of fish-, spill-, and sluiceway-passage efficiencies of radio-tagged juvenile Chinook salmon during spring and summer at The Dalles Dam in 2005: Final report of research during 2005. U.S. Army Corps of Engineers, Environmental Resources Branch, Portland, OR. Contract No. W66QKZ403369586. 106 p.
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Martens, K.D., and P.J. Connolly. 2008. Lower Methow tributaries intensive effectiveness monitoring study. Interim report. U.S. Bureau of Reclamation, Boise, ID.
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Perry, R.W., T.J. Kock, M.S. Novick, A.C. Braatz, S.D. Fielding, G.S. Hansen, J.M. Sprando, T.S. Wilkerson, G.T. George, J.L. Schei, N.S. Adams, and D.W. Rondorf. 2008. Survival and migration behavior of juvenile salmonids at Lower Granite Dam 2005, Final report of research. U.S. Army Corps of Engineers, Walla Walla District, Walla Walla, WA. Contract No. W68SBV50498133. 140 p.
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Tiffan, K.F.. 2008. Differences in subyearling fall Chinook salmon migratory behavior in the Snake and Clearwater rivers. Annual report 2006. Pages 68-84 in Tiffan, K.F. and W.P. Connor, (eds.), Effects of summer flow augmentation on the migratroy behavior and survival of juvenile Snake River fall Chinook salmon. Bonneville Power Administration, Portland, OR, Contract No. 27447.
Tiffan, K.F. and W.P. Connor, (eds.). 2008. Effects of summer flow augmentation on the migratory behavior and survival of juvenile Snake River fall Chinook salmon. Annual report 2006. Bonneville Power Administration, Portland, OR, Contract No. 27447.
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Allen, B., C. Munz, and E. Harvey. 2007. Report A: Fish distribution and population dynamics in Rock Creek, Klickitat County, Washington. Pages A11-A78 in Rock Creek fish and habitat assessment for prioritization of restoration and protection actions. June 1, 2008 - May 31, 2013. Prepared by E. Harvey, Yakama Nation Fisheries Resource Management, Goldendale Field Office for the Bonneville Power Administration. Project Number 2007-156-00, Contract Number 56662.
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Connolly, P.J.. 2005. Lower Methow tributaries effectiveness monitoring study: Study plan 2004-2008. U.S. Bureau of Reclamation.
Connolly, P.J., I.G. Jezorek, and E.F. Prentice. 2005. Development and use of in-stream PIT-tag detection systems to assess movement behavior of fish in tributaries of the Columbia River Basin, USA. Proceedings of the Measuring Behavior 2005, 5th International Conference on Methods and Techniques in Behavioral Research. 217-220. Wageningen, The Netherlands.
Connor, W.P., J.G. Sneva, K.F. Tiffan, R.K. Steinhorst, and D. Ross. 2005. Two alternative juvenile life history types for fall Chinook salmon in the Snake River basin. Transactions of the American Fisheries Society, 134: 291-304.
Feist, G.W., M.A.H. Webb, D.T. Gundersen, E.P. Foster, C.B. Schreck, A.G. Maule, and M.S. Fitzpatrick. 2005. Evidence of detrimental effects of environmental contaminants on growth and reproductive physiology of white sturgeon in impounded areas of the Columbia River. Environmental Health Perspectives, 113(12): 1675-1682.
Gadomski, D., and M. Parsley. 2005. Vulnerability of young white sturgeon Acipenser transmontanus, to predation in the presence of alternative prey. Environmental Biology of Fishes, 74: 389-396.
Gadomski, D.M., and M.J. Parsley. 2005. Laboratory studies on the vulnerability of young white sturgeon to predation. North American Journal of Fisheries Management, 25(2): 667-674.
Gadomski, D.M., and M.J. Parsley. 2005. Effects of turbidity, light level, and cover on predation of white sturgeon larvae by prickly sculpins. Transactions of the American Fisheries Society, 134(2): 369-374.
Haskell, C.A., K.F. Tiffan, R.C. Koch, and D.W. Rondorf. 2005. Crims Island habitat restoration in the Columbia River estuary-fisheries monitoring and evaluation, 2003. U.S. Army Corps of Engineers, Portland, OR, Contract No. W66QKZ60441176.
Hatten, J.R., A. Averill-Murray, W.E. Van Pelt. 2005. A spatial model of potential jaquar habitat in Arizona. Journal of Wildlife Management, 69(3): 1024-1033.
Jezorek, I.G., P.J. Connolly, and K. Marens. 2005. Wind River Watershed Project: flow, temperature, and habitat conditions. Annual report April 2002-March 2003. Bonneville Power Administration, Portland, OR, Project No. 1998-019-00 Contract No. 00004973.
Jezorek, I.G., and J.H. Petersen. 2005. Monitoring and assessment of juvenile steelhead on Toppenish National Wildlife Refuge. Annual report 2003. U.S. Fish and Wildlife Service, Toppenish National Wildlife Refuge, Toppenish, WA.
Johnson, G.E., S.M. Anglea, N.S. Adams, and T.O. Wik. 2005. Evaluation of a prototype surface flow bypass for juvenile salmon and steelhead at the powerhouse of Lower Granite Dam, Snake River, Washington, 1996-2000. North American Journal of Fisheries Management, 25(1): 138-151., https://dx.doi.org/10.1577/M04-024.1
Maule, A.G., E.H. Jørgensen, M.M. Vijayan, and J.-E.A. Killie. 2005. AROCLOR 1254 exposure reduces disease resistance and innate immune responses in fasted Arctic char. Environmental Toxicology and Chemistry, 24: 117-124.
Meeuwig, M.H., J.M. Bayer, and J.G. Seelye. 2005. Effects of temperature on survival and development of early life stage Pacific and western brook lampreys. Transactions of the American Fisheries Society, 134: 19-27.
Meeuwig, M.H., and J.M. Bayer. 2005. Morphology and aging precision of statoliths from larvae of Columbia River Basin lampreys. North American Journal of Fisheries Management, 25: 38-48.
Mesa, M.G., and C.M. Magie. 2005. Assessment of low-level water chemistry in selected streams of the Washougal, Lewis, and Winder River watersheds, 2003 final report. Lower Columbia Fish Enhancement Group and the U. S. Forest Service.
Parsley, M.J., D.M. Gadomski, P. Kofoot. 2005. White sturgeon mitigation and restoration in the Columbia and Snake rivers upstream from Bonneville Dam, Annual Progress Report April 2003 - March 2004. Report C. Bonneville Power Administration, Portland, OR. Pages 87-114.
Perry R., M. Farley, G. Hansen, J. Morse, and D. Rondorf. 2005. Turbulence investigation and reproduction for assisting downstream migrating juvenile salmonids, Part II of II: Effects of induced turbulence on behavior of juvenile salmon, 2001-2005 final report. Project No. 2001-01-000. Contract No. 00007424. Bonneville Power Administration DOE/BP-00007427-1. 61 p
Perry, R.W., A.C. Braatz, S.D. Fielding, J.N. Lucchesi, J.M. Plumb, N.S. Adams, and D.W. Rondorf. 2005. Survival and migration behavior of juvenile salmonids at McNary Dam, 2004, Final report of research. U.S. Army Corps of Engineers, Walla Walla District, Walla Walla, WA. Contract No. W68SBV40271050. 136 p.
Petersen, J.H., and C.P. Paukert. 2005. Development of a bioenergetics model for humpback chub and evaluation of water temperature changes in the Grand Canyon, Colorado River. Transactions of the American Fisheries Society, 134: 960-974.
Reagan R.E., S.D. Evans, L.S. Wright, M.J. Farley, N.S. Adams, and D.W. Rondorf. 2005. Passage behavior of radio-tagged subyearling Chinook salmon at Bonneville Dam, 2004. U.S. Army Corps of Engineers, Portland, OR. Contract No. W66QKZ40238289. 69 p.
Reagan, R.E., N.S. Adams, D.W. Rondorf, G. Fitzgerald, R. Spateholts, T. Hoffman, and D.E. Olson. 2005. Distribution, migration behavior, habitat use, and species interactions of fall-released juvenile hatchery spring Chinook salmon in the Deschutes River, Oregon, 2003. U.S. Fish and Wildlife Service, Vancouver, WA. 42 p.
Reagan, R.E., S.D. Evans, L.S. Wright, M.J. Farley, N.S. Adams, and D.W. Rondorf. 2005. Passage behavior of radio-tagged yearling Chinook salmon and steelhead at Bonneville Dam, 2004: Revised for corrected spill annual report. U.S. Army Corps of Engineers, Portland, OR. Contract No.W66QKZ40238289. 69 p.
Robinson, T.C., and J.M. Bayer. 2005. Upstream migration of Pacific lampreys in the John Day River, OR: behavior, timing, and habitat use. Northwest Science, 79: 106-109.
Tiffan, K.F., D.W. Rondorf, and J.J. Skalicky. 2005. Diel spawning behavior of chum salmon in the Columbia River. Transactions of the American Fisheries Society, 134: 892-900.
Tiffan, K.F., and D.W. Rondorf. 2005. Measuring nighttime spawning behavior of chum salmon using a dual-frequency identification sonar (DIDSON). In Proceedings of Measuring Behavior 2005, Wageningen, The Netherlands.
Tiffan, K.F., and W.P. Connor, (eds.). 2005. The effects of summer flow augmentation on the migratory behavior and survival of juvenile Snake River fall Chinook salmon. Annual report 2003. Bonneville Power Administration, Portland, OR.
Tiffan, K.T., and W.P. Connor (eds.). 2005. Investigating passage of ESA-listed juvenile fall Chinook salmon at Lower Granite Dam during winter when the fish bypass system is not operated. Annual report 2004. Bonneville Power Administration, Portland, OR, Project No. 2002032.
Walker, C.E., R.M. Schrock, T.J. Reilly, and A.L. Baehr. 2005. A direct immunoassay for detecting diatoms in groundwater as an indicator of the direct influence of surface water. Journal of Applied Phycology, 17: 81-90.
Aluru, N., E.H. Jørgensen, A.G. Maule, and M.M. Vijayan. 2004. PCB disruption of the hypothalamus-pituitary-interrenal axis involves brain glucocorticoid receptor downregulation in anadromous Arctic charr. American Journal of Physiology - Regulatory, Integrative and Comparative Physiology, 287:R787-R793.
Beeman, J.W., C. Grant, and P. Haner. 2004. Comparison of three underwater antennas for use in radiotelemetry. North American Journal of Fisheries Management, 24(1): 275-281., https://dx.doi.org/10.1577/M02-081
Cash, K.M., T.W. Hatton, E.C. Jones, R.J. Magie, N.S. Adams, and D.W. Rondorf. 2004. Three-dimensional fish tracking to evaluate the removable spillway weir at Lower Granite Dam during 2003, Annual report 2003. U.S. Army Corps of Engineers, Walla Walla, WA. Contract No. W68SBV00104592. 102 p.
Connolly, P.J., and K. Martens. 2004. Lower Methow tributaries intensive effectiveness monitoring study. 2004 progress report. U.S. Bureau of Reclamation.
Connor, W.P., K.F. Tiffan, and J.G. Sneva. 2004. Investigating passage of ESA-listed juvenile fall Chinook salmon at Lower Granite Dam during winter when the fish bypass system is not operated. Annual report 2003. Bonneville Power Administration, Portland, OR.
Duda, J.J., D.C. Freeman, M. Brown, J.M. Emlen, J.H. Graham, A.J. Krzysik, J.C. Zak, and D.A. Kovacic. 2004. Estimating disturbance effects from military training using developmental instability and physiological measures of plant stress. Ecological Indicators, 3(4): 252-262.
Gadomski, D.M. and C.N. Frost (eds.). 2004. Persistence of identifiable remains of white sturgeon juveniles in digestive tracts of northern pikeminnow. California Department of Fish and Game, 90.
Gadomski, D.M., D.A. Venditti, T.C. Robinson, J.W. Beeman, and A.G. Maule. 2004. Distribution and relative abundance of fishes in littoral areas of Chief Joseph Reservoir, Columbia River. Northwest Science, 78(1): 48-58.
Gadomski, D.M., M.J. Parsley, D.G., P. Kofoot. 2004. White sturgeon mitigation and restoration in the Columbia and Snake rivers upstream from Bonneville Dam, Annual progress report April 2002 - March 2003.. Report C. Pages 70-101 in Ward, D.L. (ed.). Bonneville Power Administration, Portland, OR, Project No. 86-50.
Gale, W.L., A.G. Maule, A. Postera, and M.H. Peters. 2004. Acute exposure to gas-supersaturated water does not affect reproductive success of female adult Chinook salmon late in maturation. River Research and Applications, 20: 565-576.
Hardiman, J.M., B.M. Johnson, and P.J. Martinez. 2004. Do predators influence the distribution of age-0 kokanee in a Colorado Reservoir?. Transactions of the American Fisheries Society, 133(6): 1366-1378, https://dx.doi.org/10.1577/T03-1234.1
Haskell, C.A., K.T. Tiffan, R.C. Koch, J.A. Heinz, M.G. Mesa, and D.W. Rondorf. 2004. Water temperature effects on fall Chinook salmon in the Snake and Columbia Rivers. 2002 Final report of research. U.S. Army Corps of Engineers. Walla Walla, WA. Contract No. W68B20243272. 50 p.
Haskell, C.A., K.T. Tiffan, W.P. Connor, and J.G. Sneva. 2004. Passage of juvenile fall Chinook salmon at Lower Granite Dam during winter. Annual report 2003. Tiffan, K.F. and W.P. Connor, (eds.), Investigating passage of ESA-listed juvenile fall Chinook salmon at Lower Granite Dam during winter when the fish bypass system is not operated. Bonneville Power Administration, Portland, OR.
Hausmann, B., J. Beeman, H. Hansel, S. Juhnke, and P. Haner. 2004. Estimates of fish, spill, and sluiceway passage efficiencies of radio-tagged juvenile salmonids relative to the operation of the J-design Sluiceway Guidance Improvement Device at The Dalles Dam in 2002. U.S. Army Corps of Engineers, Portland, OR, Contract Number W66QKZ20364279.
Hausmann, B., J. Beeman, H. Hansel, S. Juhnke, and P. Haner. 2004. Estimates of fish, spill, and sluiceway passage efficiencies of radio-tagged juvenile salmonids relative to spring and summer spill treatments at John Day Dam in 2003. U.S. Army Corps of Engineers, Portland, OR.
Maule, A.G. 2004. Gas bubble disease monitoring and research of juvenile salmonids. Annual report 2004. Bonneville Power Administration, Portland, OR, Contract No. 96-AI-93279.
Maule, A.G. 2004. Xenobiotic impact on Arctic char: Nutritional modulation and physiological consequences. Final report to the National Science Foundation (NSF Project OPP 9908890).
McCarthy, S.G. 2004. Trophic performance of Oncorhynchus mykiss in tributaries of the south fork Trinity River, northern California. Thesis University of Washington 2004, Seattle, WA.
Meeuwig, M.H., J.M. Bayer, J.G. Seelye, and R.A. Reiche. 2004. Identification of larval Pacific lampreys (Lampetra tridentata), river lampreys (L. ayresi), and western brook lampreys (L. richardsoni) and thermal requirements of early life history stages of lampreys. Final report 2003-2004. Bonneville Power Administration, Portland, OR, Contract No. 00AI23249.
Mesa, M.G., L.K. Weiland, and G.B. Zydlewski. 2004. Critical swimming speeds of wild bull trout. Northwest Science, 78: 59-65.
Parsley, M.J., and N.D. Popoff. 2004. Site fidelity, habitat associations, and behavior during dredging operations of white sturgeon at Three Tree Point in the lower Columbia River. Final report, Environmental Resource Branch, U.S. Army Corps of Engineers, Portland District, Portland, OR.
Perry, R.W., A.C. Braatz, M.J. Farley, and D.W. Rondorf. 2004. Migration behavior of juvenile salmonids and evaluation of a modified box entrance at Cowlitz Falls Dam, Washington, 2003. Lewis County Public Utility District, Chehalis, WA.
Poole, G.C., J.B. Dunham, D.M. Keenan, S.T. Sauter, D.A. McCullough, C. Mebane, J.C. Lockwood, D.A. Essig, M.P. Hicks, D.J. Sturdevant, E.J. Materna, S.A. Spalding, J. Risley, and M. Deppman. 2004. The case for regime-based water quality standards. BioScience, 54: 155-161.
Reagan, R.E., P.J. Connolly, N.S. Adams, M.G. Mesa, and D.W. Rondorf. 2004. Distribution, migration behavior, habitat use, and species interactions of fall-released juvenile hatchery spring Chinook salmon on the Deschutes River, Oregon, 2002, Annual report 2002. Columbia River Fisheries Program Office, U.S. Fish and Wildlife Service, Vancouver, WA. 63 p.
Robinson, T.C., J.M. Bayer, and J.G. Seelye. 2004. Olfactory sensitivity of Pacific lampreys to conspecific bile acids. Confederated Tribes of the Umatilla Indian Reservation, Pendleton, OR, Contract No. 406-01.
Sauter, S.T., R.M. Schrock, J.H. Petersen, and A.G. Maule. 2004. Assessment of smolt condition: Biological and environmental interactions -- The impact of prey and predators on juvenile salmonids. Bonneville Power Administration, Portland, OR. Project No. 8740100.
Smith, C.D., T.L. Liedtke, B.J. Hausmann, J.L. Schei, J.R. Lyng, L.P. Gee, and J.W. Beeman. 2004. Egress of yearling and subyearling Chinook salmon and juvenile steelhead following juvenile bypass system passage at John Day Dam, 2002. U.S. Army Corps of Engineers, Portland District, Portland, OR.
Tiffan, K.F., D.W. Rondorf, and J.J. Skalicky. 2004. Imaging fall Chinook salmon redds in the Columbia River with a dual-frequency identification sonar. North American Journal of Fisheries Management, 24: 1421-1426.
Tiffan, K.F., R. Garland, D. Rondorf, and J. Skalicky. 2004. Juvenile and adult fall Chinook and chum salmon habitat studies below Bonneville Dam on the Columbia River. Annual report 2002-2003. Project No. 199900301, Bonneville Power Administration Report DOE/BP-00004701-2. 56 p
Allen, B.M., P.J. Connolly, and K. Martens. 2003. Characterization of flow, temperature, habitat conditions, and fish populations in the Rattlesnake Creek Watershed.. Connolly, P.J. (ed.), Assess current and potential salmonid production in Rattlesnake Creek associated with restoration efforts. Bonneville Power Administration, Portland, OR, Project No. 2001-025-00.9.
Beeman, J. W., D. A. Venditti, R. G. Morris, D. M. Gadomski, B. J. Adams, S. J. Vanderkooi, T. C. Robinson, and A. G. Maule. 2003. Gas bubble disease in resident fish below Grand Coulee Dam: final report of research. U.S. Bureau of Reclamation, Boise, ID, USA.
Beeman, J.W., H.C. Hansel, P.V. Haner, K. Daniel, and J. Hardiman. 2003. Estimates of fish and spill passage efficiency of radio-tagged juvenile steelhead, and yearling and subyearling Chinook salmon at John Day Dam, 2000. U.S. Army Corps of Engineers, Portland District, Portland, OR, USA.
Beeman, J.W., S. Juhnke, K. Daniel, A. Daniel, and P. Haner. 2003. Estimates of the stilling basin residence time and lateral distribution of passage of juvenile Chinook salmon passing through the spillway of The Dalles Dam. U.S. Army Corps of Engineers, Portland District, Portland, OR, USA.
Beeman, J.W., S.P. Vanderkooi, P.V. Haner, and A.G. Maule. 2003. Gas bubble disease monitoring and research of juvenile salmonids. Annual report 1999. Bonneville Power Administration, Portland, OR, Project No. 1996-021, Contract No. 96AI93279.
Beeman, J.W., T.C. Robinson, P.V. Haner, S.P. VanderKooi, and A.G. Maule. 2003. Gas bubble disease monitoring and research of juvenile salmonids, 1999. Bonneville Power Administration, Contract No. 96-AI-93279.
Cash, K.M., T.W. Hatton, E.C. Jones, R.J. Magie, K.C. Mayer, N.M. Swyers, N.S. Adams, and D.W. Rondorf. 2003. Three-dimensional fish tracking to evaluate the removable spillway weir at Lower Granite Dam during 2002, Annual report 2002. U.S. Army Corps of Engineers, Walla Walla, WA. Contract No. W68SBV00104592. 80 p.
Connolly, P.J.. 2003. Wind River watershed restoration 2000-2001. Bonneville Power Administration, Portland, OR. Project No. 0004973.
Connolly, P.J., (ed.). 2003. Assess current potential salmonid production in Rattlesnake Creek associated with restoration efforts. Annual report 2001-2002. Bonneville Power Administration, Portland, OR, Project No. 2001-025-00.
Connolly, P.J., (ed.). 2003. Assess current and potential salmonid production in Rattlesnake Creek associated with restoration efforts. Annual report 2002-2003. Bonneville Power Administration, Portland, OR, Project No. 2001-025-00.
Connolly, P.J., and J.H. Petersen. 2003. Bigger is not always better for overwintering young-of-year steelhead. Transactions of the American Fisheries Society, 132: 262-274.
Counihan, T.D., G.S. Holmberg, C.E. Walker, and J.M. Hardiman. 2003. Survival estimates of migrant juvenile salmonids in the Columbia River through John Day Dam using radio-telemetry, 2003. U.S. Army Corps of Engineers, Portland District, Portland, OR.
Dauble, D.D., T.P. Hanrahan, D.R. Geist, and M.J. Parsley. 2003. Impacts of the Columbia River hydroelectric system on main-stem habitats of fall Chinook salmon. North American Journal of Fisheries Management, 23: 641-659.
Evans, S.D., L.S. Wright, C.D. Smith, R.E. Wardell, N.S. Adams, and D.W. Rondorf. 2003. Passage behavior of radio-tagged yearling Chinook salmon at Bonneville Dam, 2002: Revised for corrected spill annual report. U.S. Army Corps of Engineers. Contract No. W66QK20303685. 58 p.
Evans, S.D., L.S. Wright, R.E. Wardell, N.S. Adams, and D.W. Rondorf. 2003. Passage behavior of radio-tagged subyearling Chinook salmon at Bonneville Dam, 2002: Revised for corrected spill annual report. U.S. Army Corps of Engineers. Contract No. W66QKZ20303685. 44 p.
Farley, M.J., R.W. Perry, D.J. Shurtleff, D.H. Feil, and D.W. Rondorf. 2003. Migration behavior of juvenile salmonids and evaluation of a modified flume entrance at Cowitz Falls Dam, Washington, 2001. Lewis County Public Utility District No. 1, Randle, WA.
Gadomski, D.M., M.J. Parsley, and D.G.P. Kofoot. 2003. White sturgeon mitigation and restoration in the Columbia and Snake rivers upstream from Bonneville Dam. Portland, Oregon. Report C. Pages 92-110 in Ward, D.L. (ed.), Annual progress report 2001-2002 to Bonneville Power Administration, Portland, OR, Project No. 86-50.
Garland, R.D., K.F. Tiffan, D.W. Rondorf, J. Skalicky, and D.R. Anglin. 2003. Assessment of chum and fall Chinook salmon spawning habitat near Ives and Pierce islands in the Columbia River. 1999-2001. Bonneville Power Administration, Portland, OR. Contract No. 00004701.
Geist, D.R., R.S. Brown, V.I. Cullinan, M.G. Mesa, S.P. VanderKooi, and C.A. McKinstry. 2003. Relationships between metabolic rate, muscle electromyograms and swim performance of adult Chinook salmon. Journal of Fish Biology, 63: 970-989.
Haskell, C.A., K.F. Tiffan, R.C. Koch, and D.W. Rondorf. 2003. Crims Island habitat restoration in the Columbia River estuary-fisheries monitoring and evaluation. 2003 Draft report of research. U.S. Army Corps of Engineers. Contract No. W68SBV11591407.
Hatten, J.R., and C.E. Paradzick. 2003. A multiscaled model of Southwestern Willow Flycatcher breeding habitat. Journal of Wildlife Management, 67(4): 774-788.
Hockersmith, E.E., W.D. Muir, S.G. Smith, B.P. Sanford, R.W. Perry, N.S. Adams, and D.W. Rondorf. 2003. Comparison of migration rate and survival between radio-tagged and PIT-tagged migrant yearling Chinook salmon in the Snake and Columbia Rivers. North American Journal of Fisheries Management, 23(2): 404-413., https://dx.doi.org/10.1577/1548-8675(2003)023<0404:COMRAS>2.0.CO;2
Jezorek, I.G., J.H. Petersen, and S.T. Sauter. 2003. Monitoring and assessment of juvenile steelhead on Toppenish National Wildlife Refuge. Science support project. Annual report 2002. U.S. Fish and Wildlife Service, Toppenish National Wildlife Refuge, Toppenish, WA.
Jezorek, I.G., P.J. Connolly, and K. Martens. 2003. Juvenile steelhead and other fish rearing in the Wind River watershed. Bonneville Power Administration, Portland, OR, Project No. 1998-0190-01.
Jezorek, I.G., P.J. Connolly, and K. Martens. 2003. Juvenile steelhead and other fish rearing in the Wind River watershed. Report B. P.J.Connolly (ed.), Wind River watershed restoration. 2000-2001. Bonneville Power Administration, Portland, OR, Project No. 0004973.
Jezorek, I.G., and J.P. Connolly. 2003. Juvenile steelhead and other fish rearing in the Wind River watershed. Connolly, J.P. (ed.), Wind River watershed restoration. 2000-2001. Bonneville Power Administration, Portland, OR, Project No. 3.
Jezorek, I.G., and P.J. Connolly. 2003. Flow, temperature, and habitat conditions in the Wind River watershed. Annual report 2000-2001. Connolly, P.J., (ed.), Wind River Watershed Restoration. Bonneville Power Administration, Portland, OR, Project No. 1998-0190-01.
Jezorek, I.G., and P.J. Connolly. 2003. Flow, temperature, and habitat conditions in the Wind River watershed. Connolly, P.J., (ed.). Bonneville Power Administration, Project No. 0004973. Report a.
Jezorek, I.G., and P.J. Connolly. 2003. Flow, temperature, and habitat conditions in the Wind River watershed. Wind River Watershed Restoration 2000-2001. Report b. Bonneville Power Administration, Portland, OR, Project No. 0004973.
Jezorek, I.G., and P.J. Connolly. 2003. Instream PIT-tag detection system. Report B. Connolly, P.J. (ed.), Assess current and potential salmonid production in Rattlesnake Creek associated with restoration efforts 2001. Bonneville Power Administration, Portland, OR, Project No. 2001-025-00.
Jezorek, I.G., and P.J. Connolly. 2003. Instream PIT-tag detection system. Report B. Connolly, P.J. (ed.), Assess current and potential salmonid production in Rattlesnake Creek associated with restoration efforts 2002. Bonneville Power Administration, Portland, OR, Project No. 2001-025-00.
Meeuwig, M.H., J.M. Bayer, J.G. Seelye, and R.A. Reiche. 2003. Identification of larval Pacific lampreys (Lampetra tridentata), river lampreys (L. ayresi), and western brook lampreys (L. richardsoni) and thermal requirements of early life history stages of lampreys. Annual report 2002-2003. Bonneville Power Administration. Portland, OR. Contract No. 00AI23249.
Mesa, M.G., J.M. Bayer, and J.G. Seelye. 2003. Swimming performance and physiological responses to exhaustive exercise in radio-tagged and untagged Pacific lampreys. Transactions of the American Fisheries Society, 132: 483-492.
Mesa, M.G., J.M. Bayer, and J.G. Seelye. 2003. Annual sex steroid and other physiological profiles of Pacific lampreys (Lampetra tridentata): implications for upstream migrations past dams? Draft annual report for 2001. U.S. Army Corps of Engineers, Portland District. Portland, OR.
Morris, R.G., J.W. Beeman, S.P. VanderKooi, and A.G. Maule. 2003. Lateral line pore diameters correlate with the development of gas bubble trauma signs in several Columbia River fishes. Comparative Biochemistry and Physiology A, 135(2): 309-320., https://dx.doi.org/10.1016/S1095-6433(03)00072-2
Perry, R.W., M.J. Bradford, and J.A. Grout. 2003. Effects of disturbance on contribution of energy sources to growth of juvenile Chinook salmon (Oncorhynchus tshawytscha) in boreal streams. Canadian Journal of Fisheries and Aquatic Sciences, 60: 390-400.
Perry, R.W., M.J. Farley, G.S. Hansen, D.J. Shurtleff, D.W. Rondorf, and R. LeCaire. 2003. Using 3D acoustic telemetry to assess the response of resident salmonids to strobe lights in Lake Roosevelt, Washington: Chief Joseph Kokanee Enhancement Feasibility Study, 2001-2002 annual report. Bonneville Power Administration, Portland, OR, Project No. 1995-001-02. DOE/BP-00004767-1. 77 p.
Perry, R.W., S.D. Fielding, A.D. Cochran, J.L. Schei, J.M. Sprando, G.T. George, N.S. Adams, and D.W. Rondorf. 2003. Turbine survival and migration behavior of subyearling Chinook salmon at McNary Dam, 2003. Bonneville Power Administration, Portland, OR, Contract No.00014243. 53 p.
Petersen, J.H., E.E. Kofoot, and B. Rose. 2003. Conditions for growth and survival of bull trout in Beulah Reservoir, Oregon. Annual report 2002. U.S. Bureau of Reclamation, Pacific Northwest Region, Boise, ID. 45 p.
Petersen, J.H., K.F. Tiffan, and D.W. Rondorf. 2003. Resource selection studies in the Columbia and Snake rivers: recent applications and future needs. Pages 141-150 in S. Huzurbazar (ed.). Resource Selection Methods and Applications. Proceedings of the 1st International Conference on Resource Selection, Laramie, WY, January 13-15, 2003.
Petersen, J.H., R. Reisenbichler, G.R. Gelfenbaum, C. Peterson, D. Baker, P.R. Leavitt, C.A. Simenstad, and F.G. Prahl. 2003. Historical changes in the Columbia River estuary based on sediment cores: feasibility studies. USGS Columbia River Estuary Cores Final Report, May 19, 2003.
Petersen, J.H., R.A. Hinrichsen, D.M. Gadomski, D.H. Feil, and D.W. Rondorf. 2003. American shad in the Columbia River. Pages 141-155 in Limburg, K.E., and J.R. Waldman, (eds.). Biodiversity, status, and conservation of the world's shads. American Fisheries Society Symposium 35, Bethesda, MD.
Petersen, J.H., and C.A. Barfoot. 2003. Evacuation of passive integrated transponder (PIT) tags from northern pikeminnow consuming tagged juvenile Chinook salmon. North American Journal of Fisheries Management, 23: 1264-1269.
Plumb, J.M., A.C. Braatz, J.N. Lucchesi, S.D. Fielding, A.D. Cochran, T.K. Nation, J.M. Sprando, J.L. Schei, R.W. Perry, N.S. Adams, and D.W. Rondorf. 2003. Behavior and survival of radio-tagged juvenile Chinook salmon and steelhead relative to the performance of a removable spillway weir at Lower Granite Dam, Washington, 2003. U.S. Army Corps of Engineers, Walla Walla, WA, Contract No. W68SBV00104592. 116 p.
Plumb, J.M., A.C. Braatz, J.N. Lucchesi, S.D. Fielding, J.M. Sprando, G.T. George, N.S. Adams, and D.W. Rondorf. 2003. Behavior of radio-tagged juvenile Chinook salmon and steelhead and performance of a removable spillway weir at Lower Granite Dam, Washington, 2002. U.S. Army Corps of Engineers, Walla Walla, WA, Contract No. W68SBV00104592. 123 p.
Plumb, J.M., M.S. Novick, A.C. Braatz, J.N. Lucchesi, J.M. Sprando, N.S. Adams, and D.W. Rondorf. 2003. Behavior and migratory delay of radio-tagged juvenile spring Chinook salmon and steelhead through Lower Granite Dam and reservoir during a drought year. 2001. U.S. Army Corps of Engineers, Walla Walla, WA, Contract No. W68SBV00104592. 64 p.
Robinson, T.C., J.M. Bayer, and J.G. Seelye. 2003. Olfactory sensitivity of Pacific lampreys to petromyzonol sulfate. Annual report 2002. In Close, D.A. (ed.), Chapter 2, Bonneville Power Administration, Portland, OR, Contract No. 9402600, Project No. 406-01.
Tiffan, K.F, D.W. Rondorf, and W.P. Connor, (eds.). 2003. Post-release attributes and survival of hatchery and natural fall Chinook salmon in the Snake River. Annual report 2000-2001. Bonneville Power Administration, Portland, OR. Contract No. DE-AI79-91BP21708.
Tiffan, K.F., C.A. Haskell, and D.W. Rondorf. 2003. Thermal exposure of juvenile fall Chinook salmon migrating through a lower Snake River reservoir. Northwest Science, 77(2): 100-109.
Tiffan, K.F., and W.P. Connor, (eds.). 2003. Effects of summer flow augmentation on the migratory behavior and survival of juvenile Snake River fall Chinook salmon. Annual report 2002. Bonneville Power Administration, Portland, OR, Contract No. DE-AI79-91BP21708.
Tiffan, K.T., C.A. Haskell, J.A. Heinz, M.G. Mesa, and D.W. Rondorf. 2003. Water temperature effects on fall Chinook salmon in the Snake and Columbia Rivers. 2001 Final report of research. U.S. Army Corps of Engineers, Walla Walla, WA. Contract No. W68SBV11591407. 29 p.
Yun, Sang-Seon, S.P. Alexander, J.M. Bayer, J.G. Seelye, D.A. Close, and W. Li. 2003. HPLC and ELISA analyses of larval bile acids from Pacific and western brook lampreys. Steroids, 68: 515-523.
Allen, B.M., and E.P. Bergersen. 2002. Factors influencing the distribution of Myxobolus cerebralis, the causative agent of whirling disease, in the Cache la Poudre River, Colorado. Diseases of Aquatic Organisms, 49: 51-60.
Barfoot, C.A., D.M. Gadomski, and J.H. Petersen. 2002. Resident fish assemblages in shallow shorelines of a Columbia River impoundment. Northwest Science, 76: 103-117.
Connolly, P.J., C.S. Sharpe, and S. Sauter. 2002. Evaluate status of coastal cutthroat trout in the Columbia River above Bonneville Dam, Portland, Oregon. Bonneville Power Administration, Portland, OR, Project No. 0005678.49.
Connolly, P.J., and B. Bair. 2002. Watershed restoration for anadromous rainbow trout in Washington's Wind River, USA. Pages 194-208 in Proceedings of the 13th International Salmonid Habitat Enhancement Workshop: Westport, Co. Mayo, Ireland : 16th - 19th September, 2002. Central Fisheries Board, Dublin, Ireland.
Counihan, T.D., K. Felton, G.S. Holmberg, and J.H. Petersen. 2002. Estimating the survival of juvenile salmonids passing through The Dalles Dam using radio-telemetry, 2002. U.S. Army Corps of Engineers, Portland District, Portland, OR.
Duran, I.N., T.L. Liedtke, and J.H. Petersen. 2002. Predator-prey interactions in The Dalles Dam tailrace. U.S. Army Corps of Engineers, Portland, OR.
Evans, S.D., L.S. Wright, C.D. Smith, R.E. Wardell, N.S. Adams, and D.W. Rondorf. 2002. Passage behavior of radio-tagged yearling Chinook salmon and steelhead at Bonneville Dam 2002. U.S. Army Corps of Engineers, Portland OR, Contract No. W66QKZ10442576. 58 p.
Gadomski, D.M., M.J. Parsley, D.G. Gallion, and P. Kofoot. 2002. White sturgeon mitigation and restoration in the Columbia and Snake rivers upstream from Bonneville Dam. Report C. Pages 48-113 in Ward, D.L. (ed.), Annual progress report 2000-2001 to Bonneville Power Administration, Portland, OR, Project No. 86-50.
Garland, R.D., K.F. Tiffan, D.W. Rondorf, and L.O. Clark. 2002. Comparison of subyearling fall Chinook salmon's use of riprap revetments and unaltered habitats in Lake Wallula of the Columbia River. North American Journal of Fisheries Management, 22: 1283-1289.
Haskell, C.A., and J.A. Stanford. 2002. Diet, distribution and life history of Neomysis mercedis in John Day Reservoir of the Columbia River (USA). Open File Report 169-02. Flathead Lake Biological Station, The University of Montana, Polson, MT. Bonneville Power Administration, Portland, OR.
Jørgensen, E. H., M. N. Vijayan, N. Aluru, and A. G. Maule. 2002. Fasting modifies Aroclor 1254 impact on plasma cortisol, glucose and lactate responses to a handling disturbance in Arctic char. Comparative Biochemistry and Physiology C Comparative Pharmacology, 132: 235-245.
Jager, H. I., W. Van Winkle, J. A. Chandler, K. B. Lepla, P. Bates, and T. D. Counihan. 2002. A simulation study of factors controlling white sturgeon recruitment in the Snake River. Pages 127-150 in Van Winkle, W., P.J. Anders, D.H. Secor, and D.A. Dixon, (eds.), Biology, management, and protection of North American sturgeon. American Fisheries Society, Bethesda, MD.
Jezorek, I. G., and J. H. Petersen. 2002. Monitoring and assessment of juvenile steelhead on Toppenish National Wildlife Refuge. Quick Response Project for 2001. U.S. Fish and Wildlife Service, Toppenish National Wildlife Refuge, Toppenish, WA.
Liss, W.J., G.L. Larson, L.M. Ganio, T.J. Tyler, and R.L. Hoffman. 2002. Distributions and abundances of larval salamanders (Ambystoma macrodactylum) and large copepods (Diaptomus sp.) in relation to introduced trout and abiotic factors in mountain lakes of North Cascades National Park Service Complex. Pages 63-133 in Liss, W.J., G.L. Larson, and R.L. Hoffman (eds.), Ecological impact of introduced trout on native aquatic communities in mountain lakes: Phase III Final Report, U.S. Geological Survey.
Meeuwig, M.H., J.M. Bayer, J.G. Seelye, and R.A. Reiche. 2002. Identification of larval Pacific lampreys (Lampetra tridentata), river lampreys (L. ayresi), and western brook lampreys (L. richardsoni) and thermal requirements of early life history stages of lampreys. Annual report 2001-2002. Bonneville Power Administration, Portland, OR, Contract No. 00AI23249.
Mesa, M. G., L. K. Weiland, and P. Wagner. 2002. Effects of acute thermal stress on the survival, predator avoidance, and physiology of juvenile fall Chinook salmon. Northwest Science, 76: 118-128.
Parsley, M.J., D.G. Gallion, K.M. Kappenman, and P.E. Kofoot. 2002. White sturgeon mitigation and restoration in the Columbia and Snake Rivers upstream from Bonneville Dam. In Ward, D. (ed.), Bonneville Power Administration, Portland, OR.
Parsley, M.J., P. J. Anders, A. I. Miller, L.G. Beckman, and G.T. McCabe Jr.. 2002. Recovery of white sturgeon populations through natural production: Understanding the influence of abiotic and biotic factors on spawning and subsequent recruitment. Pages 55-66 in Van Winkle, W., P.J. Anders, D.H. Secor, and D.A. Dixon, (eds.), Biology, management, and protection of North American sturgeon. American Fisheries Society, Symposium 28, Bethesda, MD.
Perry, R.W., M.J. Farley, T.J. Darland, G.S. Hansen, D.H. Feil, D.W. Rondorf, and R. LeCaire. 2002. Feasibility of using 3D acoustic telemetry to assess the response of resident salmonids to strobe lights in Lake Roosevelt, WA. Bonneville Power Administration, Portland, OR, Project No. 1995-011-02.
Petersen, J.H. 2002. Compensatory feeding following a predator removal program: detection and mechanisms. Bonneville Power Administration, Portland, OR.
Petersen, J.H., and E.E. Kofoot. 2002. Conditions for growth and survival of bull trout in Beulah Reservoir, Oregon. Annual report 2001. U.S. Bureau of Reclamation, Pacific Northwest Region, Boise, ID. 43 p.
Plumb, J.M, A.C. Braatz, J.N. Lucchesi, S.D. Fielding, J.M. Sprando, G.T. George, N.S. Adams, and D.W. Rondorf. 2002. Migration behavior of radio-tagged juvenile Chinook salmon and steelhead relative to the performance of a removable spillway weir at Lower Granite Dam, Washington 2002. U. S. Army Corps of Engineers, Walla Walla, WA, Contract No. W68SBV00104592.
Schrock, R.M., R.E. Reagan, and T.R. Batt. 2002. BIGSAM: A Biologically Integrated Geospatial Salmonid data Access Management tool. A prototype program on compact disk.
Tiffan, K.F., R.D. Garland, and D.W. Rondorf. 2002. Quantifying flow-dependent changes in subyearling fall Chinook salmon rearing habitat using two-dimentional spatially explicit modeling. North American Journal of Fisheries Management, 22(3): 713-726.
Tyler, T.J., W.J. Liss, G.L. Larson, and L.M. Ganio. 2002. Abundance and behavior of larval long-toed salamanders (Ambystoma macrodactylum) in naturally fishless lakes and lakes with non-reproducing populations of introduced trout in the northern Cascade Mountains, Washington, USA. Pages 4-42 in Liss, W.J., Larson, G.L., and Hoffman, R.L. (eds.), Ecological impact of introduced trout on native aquatic communities in mountain lakes: Phase III Final Report, U.S. Geological Survey.
Adams, N.S., G.E. Johnson, D.W. Rondorf, S.M. Anglea, and T. Wik. 2001. Biological evaluation of the behavioral guidance structure at Lower Granite dam on the Snake River, Washington in 1998. Pages 145-160 in C. C. Coutant, (ed.), Behavioral technologies for fish guidance: Symposium 26. American Fisheries Society, Bethesda, MD.
Allen, B., T.L. Liedtke, A. Daniel, J. Begala, M. Salway, and J. Beeman. 2001. Monitoring tailrace egress in the stilling basin, the ice-trash sluiceway, and the powerhouse of The Dalles Dam, 2000. U.S. Army Corps of Engineers, Portland, OR, Contract No. W66QKZ00391996.
Balfry, S.K., A.G. Maule, and G.K. Iwama. 2001. Coho salmon Oncorhynchus kisutch strain differences in disease resistance and non-specific immunity, following immersion challenges with Vibrio anguillarum. Diseases of Aquatic Organisms, 47: 39-48.
Bayer, J.M., and T.D. Counihan. 2001. Length changes in white sturgeon larvae preserved in ethanol or formaldehyde. Collection Forum, 15(1-2): 57-64.
Bayer, J.M., M.H. Meeuwig, and J.G. Seelye. 2001. Identification of larval Pacific lampreys (Lampetra tridentata), river lampreys (L. ayresi), and western brook lampreys (L. richardsoni) and thermal requirements of early life history stages of lampreys. Bonneville Power Administration, Portland, OR, Project No. 2000-029 Contract No. 00AI23249.
Bayer, J.M., T.C. Robinson, and J.G. Seelye. 2001. Upstream migration of Pacific lampreys in the John Day River: behavior, timing and habitat use. Presentation of research 2000. Bonneville Power Administration, Portland, OR, Project No. 2000-052, Contract No. 00AI26080.
Bayer, J.M., and J.G. Seelye. 2001. Olfactory sensitivity of Pacific lampreys to petromyzonol sulfate. Annual report 2000. Confederated Tribes of the Umatilla Indian Reservation. Pendleton, OR, Contract No. 406-01 22.
Beeman, J.W. and T.D. Counihan. 2001. Using radiotelemetry to determine fish passage information at large hydroelectric dams: Design and analysis to achieve multiple objectives with a single design. Biotelemetry 16: Proceedings of the 16th International Symposium on Biotelemetry, Vienna, Austria, May 6-11, 2001. Wageningen, The Netherlands, International Society on Biotelemetry.
Beeman, J.W., and A.G. Maule. 2001. Residence times and diel passage distributions of radio-tagged juvenile spring Chinook salmon and steelhead in the gatewell and fish collection channel of the Columbia River dam. North American Journal of Fisheries Management, 21(3): 455-463., https://dx.doi.org/10.1577/1548-8675(2001)021<0455:RTADPD>2.0.CO;2
Beeman, J.W., and A.G. Maule. 2001. Use of a miniature pressure-sensitive transmitter to determine the in-situ migration depths of juvenile salmonids in relation to total dissolved gas supersaturation. Proceedings of the 16th international symposium on biotelemetry, Vienna, Austria, May 6-11, 2001.
Cash, K.M., N.S. Adams, T.W. Hatton, E.C. Jones, and D.W. Rondorf. 2001. Three-dimensional fish tracking to evaluate the operation of the Lower Granite surface bypass collector and behavioral guidance structure during 2000, Annual report 2000. U.S. Army Corps of Engineers, Walla Walla, WA. 73 p.
Connolly, P.J., and I. Jezorek. 2001. Juvenile and resident fish populations in the Wind River watershed. Connolly, P.J. (ed.), Wind River watershed restoration. Volume III. Bonneville Power Administration, Portland, OR, Project No. 1998-019-01.
Connor, W.P., T.C. Bjornn, H.L. Burge, A.R. Marshall, H.L. Blankenship, R.K. Steinhorst, and K.F. Tiffan. 2001. Early life history attributes and run composition of PIT-tagged wild subyearling Chinook salmon recaptured after migrating downstream past Lower Granite Dam. Northwest Science, 75: 254-261.
Counihan, T.D., K. Felton, and G.S. Holmberg. 2001. Estimating the survival of juvenile salmonids passing through The Dalles Dam using radio-telemetry, 2001. U.S. Army Corps of Engineers, Portland District, Portland, OR.
Counihan, T.D., and J.H. Petersen. 2001. Survival estimates of migrant juvenile salmonids in the Columbia River from John Day Dam through Bonneville Dam using radio-telemetry. Annual report 2000. Bonneville Power Administration, Portland, OR.
DeAngelis, D.L., and J.H. Petersen. 2001. Importance of the predator's ecological neighborhood in modeling predation on migrating prey. Oikos, 94: 315-325.
Evans, S.D., C.D. Smith, N.S. Adams, and D.W. Rondorf. 2001. Passage behavior of radio-tagged yearling Chinook salmon at Bonneville Dam, 2001. U.S. Army Corps of Engineers, Portland, OR, Contract No. W66QKZ10442576. 31 p.
Evans, S.D., J.P. Plumb, A.C. Braatz, K.S. Gates, N.S. Adams, and D.W. Rondorf. 2001. Passage behavior of radio-tagged yearling Chinook salmon and steelhead at Bonneville Dam associated with the surface bypass program, 2000. U.S. Army Corps of Engineers, Portland, OR, Contract No. W66QKZ00200128. 46 p.
Evans, S.D., N.S. Adams, and D.W. Rondorf. 2001. Passage behavior of radio-tagged subyearling Chinook salmon at Bonneville Dam associated with the surface bypass program, 2000. U.S. Army Corps of Engineers, Portland, OR, Contract No. W66QKZ00200128. 40 p.
Faber, D.M., M.A. Weiland, R.A. Moursund, and T.J. Carlson (PNNL), N. Adams, and D. Rondorf. 2001. Evaluation of the fish passage effectiveness of the Bonneville I prototype surface collector using three-dimensional ultrasonic fish tracking - Final Report. U.S. Army Corps of Engineers, Portland, OR. Contract No. DE-AC06-76RLO1830. PNNL-13526. 93 p.
Gadomski, D.M., C.A. Barfoot, J.M. Bayer, and T.P. Poe. 2001. Early life history of the northern pikeminnow in the lower Columbia River basin. Transactions of the American Fisheries Society, 130: 250-262.
Gadomski, D.M., and P. Wagner. 2001. Effects of water-level fluctuations on resident fish larvae and age-0 juveniles in the Hanford Reach of the Columbia River during July-September 1998-2000. Bonneville Power Administration, Portland, OR.
Gannam, A.L., and R.M. Schrock. 2001. Immunostimulants in fish diets. InC. Lim and C.D. Webster, (eds.), "Nutrition and Fish Health". The Haworth Press, New York, NY.
Harrahy, L.N.M., C.B. Schreck, and A.G. Maule. 2001. Antibody-producting cells correlated with body weight in juvenile Chinook salmon (Oncorhynchus tshawytscha) acclimated to optimal and elevated temperatures. Fish and Shellfish Immunology, 11: 653-659.
Haskell, C.A., D.W. Rondorf, and K.F. Tiffan. 2001. Spatial, temporal, and community dynamics of zooplankton in McNary and John Day Reservoirs. Tiffan, K.F., and D.W. Rondorf, (eds.). Post-release attributes and survival of hatchery and natural fall Chinook salmon in the Snake River. Bonneville Power Administration, Portland, OR, Contract No. DE-AI79-1BP21708.
Jezorek, I.G., and P.J. Connolly. 2001. Flow, temperature, and habitat conditions in the Wind River watershed. Connolly, P. J. (ed.), Wind River watershed restoration. Volume IV, Bonneville Power Administration. Portland, OR, Project No. 1998-019-01.
Mesa, M.G., J.M. Bayer, J.G. Seelye, and L.K. Weiland. 2001. Swimming performance and exhaustive stress in Pacific lampreys (Lampetra tridentata): implications for upstream migrations past dams.. U.S. Army Corps of Engineers, Portland, OR.
Perry, R.W., N.S. Adams, and D.W. Rondorf. 2001. Buoyancy compensation of juvenile Chinook salmon implanted with two different size dummy transmitters. Transactions of the American Fisheries Society, 130(1): 46-52., https://dx.doi.org/10.1577/1548-8659(2001)130<0046:BCOJCS>2.0.CO;2
Petersen, J.H. 2001. Density, aggregation, and body size of northern pikeminnow preying on juvenile salmonids in a large river. Journal of Fish Biology, 58: 1137-1148.
Petersen, J.H, and J. F. Kitchell. 2001. Climate regimes and water temperature changes in the Columbia River: bioenergetic implications for predators of juvenile salmonids. Canadian Journal of Fisheries and Aquatic Sciences, 58: 1831-1841.
Petersen, J.H., C. Barfoot, and M. Sheer. 2001. Predation by northern pikeminnow on juvenile salmonids in The Dalles Dam tailrace: field, laboratory, and habitat modeling studies (FY2000). U.S. Army Corps of Engineers, Portland, OR.
Plumb, J.M., M.S. Novick, A.C. Braatz, N. Lucchesi, N.S. Adams, and D.W. Rondorf. 2001. The migration and reservoir delay of radio-tagged juvenile spring Chinook salmon and steelhead in the Snake River during a drought year. U.S. Army Corps of Engineers, Walla Walla, WA, Contract No. 86930151.
Plumb, J.M., M.S. Novick, N.S. Adams, and D.W. Rondorf. 2001. Behavior of radio-tagged juvenile Chinook salmon and steelhead in the forebay of Lower Granite Dam relative to the 2000 surface bypass collector and behavioral guidance structure tests. U.S. Army Corps of Engineers, Walla Walla, WA, Contract No. E-86930151. 50 p.
Poole, G., J. Dunham, M. Hicks, D. Keenan, J. Lockwood, E. Materna, D. McCullough, C. Mebane, J. Risley, S. Sauter, S. Spaulding, and D. Sturdevant. 2001. Scientific issues relating to temperature criteria for salmon, trout, char native to the Pacific Northwest. Report to the Policy Workgroup of the EPA Region 10 Water Temperature Criteria Guidance Project.
Sauter, S., J. McMillan, and J. Dunham. 2001. Salmonid behavior and water temperature. Final report to the Policy Workgroup of the EPA Region 10 Water Temperature Criteria Guidance Project.
Sauter, S.T., L. Crawshaw, and A.G. Maule. 2001. Behavioral thermoregulation in spring and fall Chinook salmon, Oncorhynchus tshawytscha, during smoltification. Northwest Science, 84(4): 369-377.
Schreck, C.B. and A.G. Maule. 2001. Are the endocrine and immune systems really the same thing?. Pages 351-357 in H.J.Th. Goos, R.K. Rastogi, H. Vaudry, and P. Pierantoni (eds.), Perspectives in Comparative Endocrinology, Unity and Diversity. Monduzzi Editore, Bolgona, Italy.
Schrock R.M., S.D. Smith, A.G. Maule, S.K. Doulos, and J.J. Rockowski. 2001. Mucous lysozyme levels in hatchery coho salmon (Oncorhynchus kisutch) and spring Chinook salmon (O. tshawytscha) early in the parr-smolt transformation. Aquaculture, 198: 169-177.
Seelye, J.G., and J.M. Bayer. 2001. Olfactory sensitivity of pacific lampreys to petromyzonol sulfate. Pendleton, Oregon. Confederated Tribes of the Umatilla Indian Reservation. Contract No. 406-01.
Tiffan, K.F., D.W. Rondorf, R.D. Garland, and P.A. Verhey. 2001. Identification of juvenile fall versus spring Chinook salmon migrating through the lower Snake River based on body morphology. Transactions of the American Fisheries Society, 129: 1389-1395.
VanderKooi, S.P., A.G. Maule, and C.B. Schreck. 2001. The effects of electroshock on immune function and disease progression in juvenile spring Chinook salmon. Transactions of the American Fisheries Society, 130: 397-408.
Venditti, D.A., T.C. Robinson, J.W. Beeman, and A.G. Maule. 2001. Gas bubble disease in resident fish below Grand Coulee Dam. U.S. Bureau of Reclamation, Boise, ID, USA.
Venditti, D.A., T.C. Robinson, J.W. Beeman, B.J. Adams, and A.G. Maule. 2001. Gas bubble disease in resident fish below Grand Coulee Dam. Annual report 1999. U.S. Bureau of Reclamation, Boise, ID.
Adams, N.S., R.S. Shively, and C. Grant. 2000. Techniques used to monitor radio-tagged juvenile salmonids at Columbia and Snake River Dams. Pages 286-295 in J. E. Eiler, D. J. Alcorn, and M. R. Neuman, (eds.), Biotelemetry 15 Proceedings of the 15th International Symposium on Biotelemetry. International Society on Biotelemetry, Wageningen, Netherlands.
Adams, N.S., R.S. Shively, and D.W. Rondorf. 2000. Advances in biotelemetry technology in the Columbia River Basin and how they are providing behavioral data used to shape fisheries management. Pages 259-268 in J. E. Eiler, D. J. Alcorn, and M. R. Neuman, (eds.), Biotelemetry 15: Proceedings of the 15th International Symposium on Biotelemetry. International Society on Biotelemetry, Wageningen, Netherlands.
Bayer, J.M., and J.G. Seelye. 2000. Technical assistance for Pacific lamprey studies: final report of research. Pendleton, Oregon. Confederated Tribes of the Umatilla Indian Reservation. Pendleton, OR.
Bjerselius, R., W. Li, J.H. Teeter, J.G. Seelye, P.B. Johnson, P.J. Maniak, G.C. Grant, C.N. Poldinghome, and P.W. Sorensen. 2000. Direct behavioral evidence that unique bile acids released by larval sea lamprey (Petromyzon marinus) function as a migratory pherome. Canadian Journal of Fisheries and Aquatic Sciences, 57: 557-569.
Connor, W.P., R.K. Steinhorst, and H.L Burge. 2000. Forecasting survival and passage of migratory juvenile salmonids. North American Journal of Fisheries Management, 20: 651-660.
Counihan, T.D., A.I. Miller, M.G. Mesa, and M.J. Parsley. 2000. The effects of dissolved gas supersaturation on white sturgeon larvae. Transactions of the American Fisheries Society, 127: 316-322.
Evans, S.D., B.J. Hausmann, N. S. Adams, and D. W. Rondorf. 2000. Evaluation of strobe lights to improve fish collection efficiency at Cowlitz Falls Dam, Washington, Final report 1999. Cowlitz Falls Project, Randle, WA. 61 p.
Faber, D.M., M.A. Weiland, R.W. Moursund, T.J. Carlson, D.W. Rondorf, N.S. Adams, and D.D. Dauble. 2000. Evaluation of three-dimensional fish behavior associated with fish passage through, around, or under prototype surface flow bypass structures. U.S. Army Corps of Engineers, Portland, OR. 62 p.
Gannam, A.L. and R.M. Schrock. 2000. Immunostimulants in fish diets. Journal of Applied Aquaculture, 9(4): 53-89.
Hansel, H.C., J.W. Beeman, T.D. Counihan, B.D. Liedtke, M.S. Novick, and J.M. Plumb. 2000. Estimates of fish and spill passage efficiency of radio-tagged juvenile steelhead and yearling Chinook salmon at John Day Dam, 1999. U.S. Army Corps of Engineers, Portland District, Portland, OR, USA.
Hansel, H.C., J.W. Beeman, T.D. Counihan, B.D. Liedtke, M.S. Novick, and J.M. Plumb. 2000. Movement, distribution, and behavior of radio-tagged sub-yearling Chinook salmon in the forebay of John Day Dam, 1999. U.S. Army Corps of Engineers, Portland District, Portland, OR, USA.
Hansel, H.C., J.W. Beeman, T.D. Counihan, J.M. Hardiman, B.D. Liedtke, M.S. Novick, and J.M. Plumb. 2000. Estimates of fish-, spill-, and sluiceway-passage efficiencies of radio-tagged juvenile steelhead and yearling Chinook salmon at The Dalles Dam, 1999. U.S. Army Corps of Engineers, Portland District, Portland, OR, USA.
Haskell, C.A., K.F. Tiffan, and D.W. Rondorf. 2000. Pre-dredging assessment of Messner Cove, Port of Morrow, Oregon on benthic invertebrate community and subyearling Chinook salmon rearing habitat.1999 Final report.. U.S. Army Corps of Engineers, Portland District, Portland, OR. 16 p.
Hockersmith, E.E., W.D. Muir, S.G. Smith, B.P. Sanford, N.S. Adams, J.M. Plumb, R.W. Perry, and D.W. Rondorf. 2000. Comparative performance of sham radio-tagged and PIT-tagged juvenile salmon. U.S. Army Corps of Engineers, Walla Walla District. Contract No. W66QKZ91521282.
Holmberg, G.S., R.E. Wardell, M.G. Mesa, N.S. Adams, and D.W. Rondorf. 2000. Evaluation of the Bonneville Dam second powerhouse juvenile bypass system, 2000. U.S. Army Corps of Engineers, Portland District, Portland, OR, USA. Contract No. W66QKZ00402124.
Holmberg, G.S., R.E. Wardell, M.G. Mesa, N.S. Adams, and D.W. Rondorf. 2000. Evaluation of the Bonneville Dam second powerhouse new juvenile bypass system. U.S. Army Corps of Engineers, Portland District, Portland, OR, USA. Contract No. W66QKZ90341930.
Johnson, G.E., N.S. Adams, R.L. Johnson, D.W. Rondorf, D.D. Dauble, and T.Y. Barila. 2000. Evaluation of the prototype surface bypass for salmonid smolts in Spring 1996 and 1997 at Lower Granite Dam on the Snake River, Washington. Transactions of the American Fisheries Society, 129(2): 381-397., https://dx.doi.org/10.1577/1548-8659(2000)129<0381:EOTPSB>2.0.CO;2
Kappenman, K.M., D.G. Gallion, P.E. Kofoot, and M.J. Parsley. 2000. White sturgeon mitigation and restoration in the Columbia and Snake Rivers upstream from Bonneville Dam. Ward (ed.), Bonneville Power Administration. Portland, OR.
Martinelli-Liedtke, T.L., R.S. Shively, G.S. Holmberg, M.B. Sheer, and R.M. Schrock. 2000. Nonlethal gill biopsy does not affect juvenile Chinook salmon implanted with radio transmitters. North American Journal of Fisheries Management, 19: 856-859.
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Gould, R.W., A.N. Palmisano, S.D. Smith, C.V.W. Mahnken, W.S. Zaugg, and E. Prentice. 1982. Seawater acclimation of premigratory (presmolt) fall Chinook salmon: a possible new management strategy?. Pages 15-19, in Carl J. Sindermann (ed.), Proceedings of the eleventh U.S.-Japan meeting on aquaculture, salmon enhancement, Tokyo, Japan, October 19-20, 1982, NOAA Technical Report NMFS 27.
Rondorf, D.W. 1981. Reproduction and early life history of fishes in a cooling lake. Master's Thesis, University of Wisconsin, Madison, WI.
Nelson, W.R., and L.G. Beckman. 1979. Entrainment of ichthyoplankton by irrigation withdrawal systems. U.S. Fish and Wildlife Service/OBS - 79/16. 29 p.
Smith, S.D. 1979. Pen-rearing of silver salmon (Oncorhynchus kisutch) in San Francisco Bay. Master's Thesis, San Francisco State University.


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